| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3485 |
|---|
| Symbol | |
|---|
| ID | 4605732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4118282 |
|---|
| End bp | 4118848 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639782906 |
|---|
| Product | cytochrome C oxidase assembly protein |
|---|
| Protein accession | YP_929357 |
|---|
| Protein GI | 119776617 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3175] Cytochrome oxidase assembly factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.117347 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGC CCGGGGTTTC TCACCGAAAG CTCATTATCG GACTCTGCCT TGGCTGTGTT
GGTATGTTCG GTTTTGGTTT TGCCCTTGTC CCCCTTTACG ACGTGCTGTG CGAACAACTG
GGGATTAACG GCAAAACCAG TTCCGAAGCC GCGCAATACA GTCAGGTACA GGTAGACGAA
GCCAGAACTG TGACCGTGGA GTTTATGGCG CAGGTTCAAC CGGGGATGCC TTGGGAATTT
GGTCCGGCGG TTAAGCGTAT GGAAGTACAT CCGGGGCAAC TGGTACGAAC CGATTTTCTG
GCACGCAACC TATCGGCAAA TGCCCTGGTT GGCCAGGCTA TTCCTTCGGT ATCCCCCGGA
CAGGGCGCCG CTTATTTCAA CAAGACTGAG TGTTTTTGCT TTAACCAACA GGTGTTGGCA
GGAAAAGGCA GTGCCAATTT GCCACTGATT TTCTTTGTGG ATCCGGATTT GCCTGAGTCT
ATCCATACCC TGACCCTCTC TTACACCCTG TATGACATCA CAGACAAGGA TCTGGCCGGT
GCCCTGCAGG CGGGAGCCAT GAAATGA
|
|---|
| Protein sequence | MTAPGVSHRK LIIGLCLGCV GMFGFGFALV PLYDVLCEQL GINGKTSSEA AQYSQVQVDE
ARTVTVEFMA QVQPGMPWEF GPAVKRMEVH PGQLVRTDFL ARNLSANALV GQAIPSVSPG
QGAAYFNKTE CFCFNQQVLA GKGSANLPLI FFVDPDLPES IHTLTLSYTL YDITDKDLAG
ALQAGAMK
|
|---|
| |