Gene Sama_3481 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3481 
Symbol 
ID4605728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp4113597 
End bp4114220 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content56% 
IMG OID639782902 
ProductLexA repressor 
Protein accessionYP_929353 
Protein GI119776613 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.216025 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACCGC TCACGCCTCG CCAGGCCGAG ATCCTGGACC TAATCAAACG CAACATCGCC 
GAAACCGGCA TGCCCCCAAC GCGGGCAGAA ATTGCATCCA GACTCGGCTT TAAAAGTGCT
AATGCCGCCG AGGAGCATCT TAAAGCGCTC GCCAAAAAGG GCTGCATTGA GATTATGCCC
GGCACCTCGC GAGGTATCAG GCTGGCGGGT GATGAGTTGG AAGATCAGCC AGACCCGGGT
TTGCCCTTGA TAGGTCAGGT GGCTGCCGGT GAACCCATTC TCGCCCAAGA GCATGTTGAG
CAGTATTATC AGGTCGATCC TGCCATGTTC CGCCCCCATG CCGATTTTCT GCTGCGGGTT
CGCGGCGACA GTATGAAAGA CATAGGTATT CTCGACGGCG ACCTGCTGGC GGTGCACAAG
ATGAACCAGG CCCGTAATGG CCAGGTGGTG GTTGCCAGGG TGGAAGACGA TGTCACGGTA
AAACGCTTCG AGAAGCAAGG CAATGTGGTG TACCTACACG CAGAGAACGA GGCATTCGCT
CCTATCAGAG TGGATCTTGC CAACCAGAGT CTCACCATCG AGGGCTTGGC TGTGGGCGTT
ATCCGTAATG GAGACTGGCT ATGA
 
Protein sequence
MRPLTPRQAE ILDLIKRNIA ETGMPPTRAE IASRLGFKSA NAAEEHLKAL AKKGCIEIMP 
GTSRGIRLAG DELEDQPDPG LPLIGQVAAG EPILAQEHVE QYYQVDPAMF RPHADFLLRV
RGDSMKDIGI LDGDLLAVHK MNQARNGQVV VARVEDDVTV KRFEKQGNVV YLHAENEAFA
PIRVDLANQS LTIEGLAVGV IRNGDWL