| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3480 |
|---|
| Symbol | |
|---|
| ID | 4605727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 4111022 |
|---|
| End bp | 4113445 |
|---|
| Gene Length | 2424 bp |
|---|
| Protein Length | 807 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639782901 |
|---|
| Product | glycerol-3-phosphate acyltransferase |
|---|
| Protein accession | YP_929352 |
|---|
| Protein GI | 119776612 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2937] Glycerol-3-phosphate O-acyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.281578 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCAC ACGAGTCTTT TTGGTTTAAG TCCTTGCGGT GGATCCAAAA GCAGTTGGTA
CACACCATAG TGGTACCTCA GGATCCCTTC GCCGATTTGA ATCTCGATCC CTCCCGCCCC
TTGGTTTACG TCATGAAAAC CGAGTCTGTG AGCGATATCG CTGCGCTCCA TGAGATAACT
GGCAAGCTTG GATTACCCAG CCCCTATCAG ATGCTGGAAA TTGATGGGAT CAAGACCCCT
AGGGTCGTGT GTCTGGAAGG CCGAAAGCCG CTGTTTGGAA AGCGTGACAG TAATGAGCCT
TTTTTGCAGA CCTTCCAGCA ATTACTGGCC CTGCACCGTC AGCAGCAAGA ACTCGATATA
CAGCTGGTGC CTGTGAGTCT TTACTGGGGA CGTACCCCGG GTAAAGAGGA TGACACCATG
CGTGCGGCAG TACTCGAACG GGAAGATCCG ACCTGGCTGC GTAAGTGTTT GATGATTTTG
TTCCTGGGTC GTCATAACTT TGTGCAGTTT TCCCGTGCTG TGTCACTTCG TCATATGGCC
GATGAACATG GCACCGATAA GCGCATTGCC CACAAGCTTG CCCGGGTCGC GAGAGTCCAT
TTCCGCCGTC AGCGTAAGGT GATGACCGGA CCTGTGTTGC CCAATCGTCA AGCCATGTTC
CATGCCCTGC TGAAATCTGA CAACCTGAAA AAAGCCATTG CTGAAGAGGC CTCCAGTAAG
AAAATCTCAG AAGAAAAGGC CCGTGAAACT GCCATTCAAT ATTTGGATGA GATTGCTGCC
GACTACTCCG ACAGCCTGGT ACGTATCGCC GAGCGCTTCC TCACCTGGCT GTGGAACAAG
CTCTATAAGG GCATCAGTAT CAAGGGTGCC GAGCAAATTC GCCAGTTGCA CCACGACGGT
CATGAGATTG TGTATGTGCC TTGCCACCGC TCGCACATGG ATTATTTGTT GCTGTCTTAC
ATCCTTTATT ACGAAGGCAT GGTGCCGCCC CACATTGCGG CCGGGATTAA CCTGAATTTC
TGGCCAGCAG GCCCCATGTT CCGCCGTGGC GGCGCCTTCT TTATCCGCCG CAGCTTCAAC
GGCAACAAGC TCTACACCGC AGTATTCCGT GAATATCTGG ATCAGCTGTT CGCAAAGGGG
TATTCGGTGG AGTACTTCAC CGAAGGTGGC CGCTCCCGTA CCGGTCGTCT GCTGGCGCCT
AAAACCGGCA TGCTGGCCAT GACCTTGTCT TCGGTTATCC GTGGCATTGA GCGACCAGTG
ACTCTGGTGC CTGTGTATTT GGGTTACGAC CATGTGATGG AAGTGGCTAC TTATCACAAA
GAGCTGTCGG GCAAGAAAAA AGAAAAGGAA TCCGTGTGGC AGGTATTTGG TGCCATACGC
AAACTGGGTA ATTTTGGCCG TGGCTATGTG AATTTTGGCC AGCCCATCAC CCTGCAGAAC
TTTTTGACCG AAAAAGTTCC CAATTGGCGC GAGGAAGTGG GTGAAGATCC CGAACAAAAA
CCTTCCTGGC TGACCCCGGT GGTGAATGCA CTGGCCAATC GGGTGATGAC CCGTATCAAT
GATGCCGCAG CCGCCAGTTC TGTTACGCTC TCCAGCATGG TATTGCTGGC CTCGGAGCAA
AATGCGCTGG AGCGCAACCA GCTGGAGCGC CAGATTGATT TGTATCTGAG CCTGCTGAAA
TCCGTCCCTT ATACCTCGTA CGCATCAGTG ACAGAGGGTT GTGGCAAGGA GCTGGTCGAT
CGCGGCATTG AGCTGAACAA GCTGACCGAA ACCAAGGATG ATTTGGGTAC CATCATCTCC
ATTGATGATA GCCTTGCCAT CTCCATGACC TATTATCGCA ACAACATCAT CCACTTGTTT
GTGATCCCCT CATTGATTGC CACAGTAATG GTGCGCCATG AAGAAGTCTC CAGAGAAGAA
CTGCAGGAGC TGGTTGCCGA GTTCTATCCG CTGCTCAAGG CAGAGCTCTT TATGGGTGTT
ACCGATTTGC CAGCCTATGT GGATGCGCTG GTGGAGTGCT TTAAGTCAGA GGGCCTGATT
ACCGGCGATA ACCGACTGAA ACTGGTCGAC GACCGTATCA ATCAGCTGTT GTTGCTGGCC
GGTGTGGTAG GTGAAACTCT CAAACGCTAC GCCATTATTT TCAACCTCTT GGGTGAGCAA
CCCAGAATGG AGCGCGCCGA CCTCGAGCAT CACAGCCATC GTCTGGCCAG TCGCCTCGGT
GCCATTCATG GGGTCATGGC ACCTGAGTTT TACGACAAAA AGCTCTATGC ATTGCTGTCG
AGTAAGCTGA AAGATCTGGG TTATCTGTCT GATAAGGCAG ATGGCGACAA GGTGCGTAAA
ATCCGTGATC ATGCCAACGG GCTCCTCAGA AGCTCAGTGC GTCAGACCAT TATTGAGACG
CTGAATCAGG AGCAGGACGA CTGA
|
|---|
| Protein sequence | MSAHESFWFK SLRWIQKQLV HTIVVPQDPF ADLNLDPSRP LVYVMKTESV SDIAALHEIT
GKLGLPSPYQ MLEIDGIKTP RVVCLEGRKP LFGKRDSNEP FLQTFQQLLA LHRQQQELDI
QLVPVSLYWG RTPGKEDDTM RAAVLEREDP TWLRKCLMIL FLGRHNFVQF SRAVSLRHMA
DEHGTDKRIA HKLARVARVH FRRQRKVMTG PVLPNRQAMF HALLKSDNLK KAIAEEASSK
KISEEKARET AIQYLDEIAA DYSDSLVRIA ERFLTWLWNK LYKGISIKGA EQIRQLHHDG
HEIVYVPCHR SHMDYLLLSY ILYYEGMVPP HIAAGINLNF WPAGPMFRRG GAFFIRRSFN
GNKLYTAVFR EYLDQLFAKG YSVEYFTEGG RSRTGRLLAP KTGMLAMTLS SVIRGIERPV
TLVPVYLGYD HVMEVATYHK ELSGKKKEKE SVWQVFGAIR KLGNFGRGYV NFGQPITLQN
FLTEKVPNWR EEVGEDPEQK PSWLTPVVNA LANRVMTRIN DAAAASSVTL SSMVLLASEQ
NALERNQLER QIDLYLSLLK SVPYTSYASV TEGCGKELVD RGIELNKLTE TKDDLGTIIS
IDDSLAISMT YYRNNIIHLF VIPSLIATVM VRHEEVSREE LQELVAEFYP LLKAELFMGV
TDLPAYVDAL VECFKSEGLI TGDNRLKLVD DRINQLLLLA GVVGETLKRY AIIFNLLGEQ
PRMERADLEH HSHRLASRLG AIHGVMAPEF YDKKLYALLS SKLKDLGYLS DKADGDKVRK
IRDHANGLLR SSVRQTIIET LNQEQDD
|
|---|
| |