| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3461 |
|---|
| Symbol | |
|---|
| ID | 4605708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4090921 |
|---|
| End bp | 4091754 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639782881 |
|---|
| Product | alpha/beta fold family hydrolase |
|---|
| Protein accession | YP_929333 |
|---|
| Protein GI | 119776593 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATACGC AGCCGCTGAA GCCCTGTCTG CTGTTGTTAC ATGGCTTTTT GGGCAGCGGC
AGCGATTGGG ATACATTGGC TCCCGAACTC GAACCCCATT TTCGGCTGCT GACACCGGAC
CTACCCGGGC ATGGCTCAGC ACCGTTTGAC GTGCGCTTCG ACGATAAGGC TGAGAATCAG
CCTGACGGCA AGGGCATAAG CCCGTTTGAC AAGGTTAGCC TTGCCCTGCT CGACTGGCTC
GCCAAGCAGG ACGTGACCGA GTTTCACCTG CTGGGTTATT CCCTCGGTGG CCGCCTGGCC
CTGCATCTGG CGAGTCTGGC CCCAAAAAGG CTGCTGAGCC TTAACCTTGA ATCCTGTCAT
CCGGGCCTTG AGAGTGACAG CGCAAGGGGC GAGCGGCTCG CCGCCGACAG CCTCTGGGCC
AAACGACTGG CCACTGAGCC CCTGCCTGAG TTTCTCGATG CCTGGTATCG TCAAGGCGTA
TTTGCCCATC TCGATGACAA CGCCCGCCAG GCTCTGGTAA CAAGGCGCTG TGCCCAGCAT
CAAGACAACA ACCGCCAGGC GCTGTTGCAG ATGTATCTGG CCACCTCGCT GGCAAATCAA
CAGGATCTCA GAGCCGTACC AGCCAACTTG CCCTGCCCGG TGAATCTTTA TGTGGGCGAG
GAAGACAACA AATTTACCGC CCTCGCCAAC CAGTGGCAGC AGCAAGCGGG TATTCACGTA
TATAGAATTG AAGGCGCCGG CCACAATTGT CATGCCGAGC AGCCGAGCCT GTTTGCACGC
AGTCTGCTTC AGGGCATATT CCATCAATCC AGCGCGGATC AATCGCATGT CTGA
|
|---|
| Protein sequence | MDTQPLKPCL LLLHGFLGSG SDWDTLAPEL EPHFRLLTPD LPGHGSAPFD VRFDDKAENQ
PDGKGISPFD KVSLALLDWL AKQDVTEFHL LGYSLGGRLA LHLASLAPKR LLSLNLESCH
PGLESDSARG ERLAADSLWA KRLATEPLPE FLDAWYRQGV FAHLDDNARQ ALVTRRCAQH
QDNNRQALLQ MYLATSLANQ QDLRAVPANL PCPVNLYVGE EDNKFTALAN QWQQQAGIHV
YRIEGAGHNC HAEQPSLFAR SLLQGIFHQS SADQSHV
|
|---|
| |