| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3457 |
|---|
| Symbol | |
|---|
| ID | 4605704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4086479 |
|---|
| End bp | 4087087 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639782877 |
|---|
| Product | TonB2 protein, putative |
|---|
| Protein accession | YP_929329 |
|---|
| Protein GI | 119776589 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAT CGCTGATGCA AAAAGGTACG CTGGGCATGT TGGGCGCTTT GGTCACCCTG
GGGCTGTTCG TCTTTATGGC CTATCTGGTC AAACAGTCTC CGGTGGAGTA TCAGGAACCC
ACAGCAACAC CTGAGCTCCA GGTTACTATG CCGGACAGAG AAGCACTCAG GCCTGTTCGA
AACACCACAC CTCCGCCCAT GCCAGAGCCG ATAAAACCGG TGGAAATCGC CACAACCGGG
GAAAACTCAG GAACAGGGGT GCCCATAGAC TCCCCCACCA TAGAACTGCC CCCCGTATCC
CAGGGCGGTT CAAACTTTGG CAGCTCAGAT TATGATGCCG TGCCCGTTGT ACAAATCCAG
CCCAACTACC CCATCAGCGC CGCCCAAAAC GGCAAAGAAG GCTTTGTGGT GGTGGGCTTT
GATATCGCTG CCGATGGCAG CACCTCCAAT GTGCGGGTGC TGGACGCCAA CCCCAAACGC
ACCTTCGATG CTGCTGCACG CGACGCGGTG AAGCGTTGGA AGTACAAACC CAAGATGGTC
GATGGCAAAC CCGTGGGTAT GAGTAACCAG CAAATTCGCC TAGATTTCAG TCTGGATCAG
CGGATTTAA
|
|---|
| Protein sequence | MGKSLMQKGT LGMLGALVTL GLFVFMAYLV KQSPVEYQEP TATPELQVTM PDREALRPVR
NTTPPPMPEP IKPVEIATTG ENSGTGVPID SPTIELPPVS QGGSNFGSSD YDAVPVVQIQ
PNYPISAAQN GKEGFVVVGF DIAADGSTSN VRVLDANPKR TFDAAARDAV KRWKYKPKMV
DGKPVGMSNQ QIRLDFSLDQ RI
|
|---|
| |