Gene Sama_3434 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3434 
Symbol 
ID4605681 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp4063864 
End bp4065672 
Gene Length1809 bp 
Protein Length602 aa 
Translation table11 
GC content60% 
IMG OID639782854 
Productsigma-54 dependent transcriptional regulator 
Protein accessionYP_929306 
Protein GI119776566 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.66609 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.268345 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCTG CCGTACAGCC CTGGCTTGCC GACTCTTGGC GTCGCAGTGA AGGTGCCGGT 
CTCAGTGAAA CCCGGCCCGG AGAACTCAAG CTCTCCCGGG TCGAACTGGA TGAGCGTTGT
GAGCGCCACC GTCAGCTTAT CGCATTGGTG GAATCCGAAG CCTTGCCGCT GTTTACCCGT
CTGATGGCCC ACACCGACAG CAGGCTGATT TTGTCGGACG CCGAGGGTTT TGTGCTGCGT
CACTGGGGAC TGTCGCGTTA CTCCGACCGT CTGGCCAACG TGGCGCTGGA CTGCGGCGTC
AATTGGCTCG AAGAGCACAA GGGCACCAAT GCCATAGGCA CAGCGCTCAG GGCCAAAGAA
GCGCTCTCTG TTGTGGGTGA GCAGCACTTT TGCCGCCCTC ACCGCTTTAT GAGCTGCACC
GCCAGCCCAA TTTTTTCGCC GTCCGGCGAA CTGATTGGCG CCCTCGACAT TACCTCCGAG
CGGCTCAAGC ACAATCAACA AACCTTATTG CTTATCTCCA GCCTGGCGCA GCAGGTGGAA
ACCGCACTCT TGTGTTCGCT GCCCGGTGGC CGCTTTCGGG TGGATTTGGC GGCTAGTCGT
CAACTGCTCA GTTCCGGCTG GCAGGGCATC CTGATTGCCG ATGATGAGGG CCGCCTGCTT
GGGCTTAATC CCATGGCGCG CCAGTACCTT GGTGGCGCCT CGCCCGGTAT GCAGTTGGGA
GAGCTGCTGG GGGACGACTG GCGTGCGCAG CAGGCGCAGT GCCTTCGCGG CGAGTTGCAT
TTGGCCACCT CGGCTATTGG CGAGGGCGCC TTATGGATTC AAACCAATAA GGCCAGCAGT
TTGCACGGTG TCAAGCCTCT GCGCTTTCAC GATCCACAGC TGGAAACCGC CTGGCAGCAG
GCGCGCAAGG TCGTCAGCCG TAAGATCCCG TTGCTGGTAC AGGGCGAAAC CGGGGTGGGT
AAAGAGCACT TCGTGCGCCA GCTGTATCAG GACAGTCGCC TCGATGGCGA GCTGGTGGCG
GTGAACTGTG CCGCCTTGCC CACCGAGCTG ATAGAGGCCG AACTCTTTGG TTATCAGGGC
GGCGCCTTTA CCGGCGCGTC ACGTCAGGGG CACCTTGGCA AGGTACGTCA GGCCGACGGT
GGCTTTCTGT TTCTGGATGA AATTGGTGAG TTGCCGCTGG CGGCACAGGG CCGGCTGTTG
CGGGTACTGC AGGAGCGTGA AGTGACCCCT GTGGGTGGCC TCAAAAGCCA TAGGGTAGAT
ATTCAGGTGG TCGCAGCCAC GCATATGGAT TTGGCCGAGA TGGTGCGCGA TGGCCGCTTT
CGTGAAGACC TTTATTTCCG TCTCAATGGT CTGCAGGTAA GCCTGCCGCC ACTGAGGCAG
CGGGCCGATA AGTCACGGCT GATCCACAAG CTGCACCGAC AGTACCGGGT CAATCCGCCG
GGAGATGAGC AGCGGCTGTG CCCACAGTTG CTGGCATTGC TGGAGGCATA TGCCTGGCCT
GGCAACCTGC GGGAGTTGGA TAACCTGATG CAGGTGGCTT GCCTGATGGC TGAAGGCGAG
CGCGAGCTGA GTCAGGCGCA CTTGAGTGAT GCCCACAGAA GGGCACTGAT GCAAGCGCGT
CCCTTTTATT CGGGCAGGAT GAACTCGGAA AGCAGCCAAT CCTCAGCAGA ATCAAGCCTT
AAGGCAGAGC TTGATGGGCG TATTCAAAAC ACCCTGGCCG ACTGCGACGG CAATATCAGT
GAAGCGGCTC GCCGCCTTGG GGTAAGCCGC AACCTGATTT ACCGCAGTCT TAAGCGTACC
GACAGTTAG
 
Protein sequence
MKSAVQPWLA DSWRRSEGAG LSETRPGELK LSRVELDERC ERHRQLIALV ESEALPLFTR 
LMAHTDSRLI LSDAEGFVLR HWGLSRYSDR LANVALDCGV NWLEEHKGTN AIGTALRAKE
ALSVVGEQHF CRPHRFMSCT ASPIFSPSGE LIGALDITSE RLKHNQQTLL LISSLAQQVE
TALLCSLPGG RFRVDLAASR QLLSSGWQGI LIADDEGRLL GLNPMARQYL GGASPGMQLG
ELLGDDWRAQ QAQCLRGELH LATSAIGEGA LWIQTNKASS LHGVKPLRFH DPQLETAWQQ
ARKVVSRKIP LLVQGETGVG KEHFVRQLYQ DSRLDGELVA VNCAALPTEL IEAELFGYQG
GAFTGASRQG HLGKVRQADG GFLFLDEIGE LPLAAQGRLL RVLQEREVTP VGGLKSHRVD
IQVVAATHMD LAEMVRDGRF REDLYFRLNG LQVSLPPLRQ RADKSRLIHK LHRQYRVNPP
GDEQRLCPQL LALLEAYAWP GNLRELDNLM QVACLMAEGE RELSQAHLSD AHRRALMQAR
PFYSGRMNSE SSQSSAESSL KAELDGRIQN TLADCDGNIS EAARRLGVSR NLIYRSLKRT
DS