| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3434 |
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| Symbol | |
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| ID | 4605681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4063864 |
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| End bp | 4065672 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639782854 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | YP_929306 |
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| Protein GI | 119776566 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.66609 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.268345 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCTG CCGTACAGCC CTGGCTTGCC GACTCTTGGC GTCGCAGTGA AGGTGCCGGT
CTCAGTGAAA CCCGGCCCGG AGAACTCAAG CTCTCCCGGG TCGAACTGGA TGAGCGTTGT
GAGCGCCACC GTCAGCTTAT CGCATTGGTG GAATCCGAAG CCTTGCCGCT GTTTACCCGT
CTGATGGCCC ACACCGACAG CAGGCTGATT TTGTCGGACG CCGAGGGTTT TGTGCTGCGT
CACTGGGGAC TGTCGCGTTA CTCCGACCGT CTGGCCAACG TGGCGCTGGA CTGCGGCGTC
AATTGGCTCG AAGAGCACAA GGGCACCAAT GCCATAGGCA CAGCGCTCAG GGCCAAAGAA
GCGCTCTCTG TTGTGGGTGA GCAGCACTTT TGCCGCCCTC ACCGCTTTAT GAGCTGCACC
GCCAGCCCAA TTTTTTCGCC GTCCGGCGAA CTGATTGGCG CCCTCGACAT TACCTCCGAG
CGGCTCAAGC ACAATCAACA AACCTTATTG CTTATCTCCA GCCTGGCGCA GCAGGTGGAA
ACCGCACTCT TGTGTTCGCT GCCCGGTGGC CGCTTTCGGG TGGATTTGGC GGCTAGTCGT
CAACTGCTCA GTTCCGGCTG GCAGGGCATC CTGATTGCCG ATGATGAGGG CCGCCTGCTT
GGGCTTAATC CCATGGCGCG CCAGTACCTT GGTGGCGCCT CGCCCGGTAT GCAGTTGGGA
GAGCTGCTGG GGGACGACTG GCGTGCGCAG CAGGCGCAGT GCCTTCGCGG CGAGTTGCAT
TTGGCCACCT CGGCTATTGG CGAGGGCGCC TTATGGATTC AAACCAATAA GGCCAGCAGT
TTGCACGGTG TCAAGCCTCT GCGCTTTCAC GATCCACAGC TGGAAACCGC CTGGCAGCAG
GCGCGCAAGG TCGTCAGCCG TAAGATCCCG TTGCTGGTAC AGGGCGAAAC CGGGGTGGGT
AAAGAGCACT TCGTGCGCCA GCTGTATCAG GACAGTCGCC TCGATGGCGA GCTGGTGGCG
GTGAACTGTG CCGCCTTGCC CACCGAGCTG ATAGAGGCCG AACTCTTTGG TTATCAGGGC
GGCGCCTTTA CCGGCGCGTC ACGTCAGGGG CACCTTGGCA AGGTACGTCA GGCCGACGGT
GGCTTTCTGT TTCTGGATGA AATTGGTGAG TTGCCGCTGG CGGCACAGGG CCGGCTGTTG
CGGGTACTGC AGGAGCGTGA AGTGACCCCT GTGGGTGGCC TCAAAAGCCA TAGGGTAGAT
ATTCAGGTGG TCGCAGCCAC GCATATGGAT TTGGCCGAGA TGGTGCGCGA TGGCCGCTTT
CGTGAAGACC TTTATTTCCG TCTCAATGGT CTGCAGGTAA GCCTGCCGCC ACTGAGGCAG
CGGGCCGATA AGTCACGGCT GATCCACAAG CTGCACCGAC AGTACCGGGT CAATCCGCCG
GGAGATGAGC AGCGGCTGTG CCCACAGTTG CTGGCATTGC TGGAGGCATA TGCCTGGCCT
GGCAACCTGC GGGAGTTGGA TAACCTGATG CAGGTGGCTT GCCTGATGGC TGAAGGCGAG
CGCGAGCTGA GTCAGGCGCA CTTGAGTGAT GCCCACAGAA GGGCACTGAT GCAAGCGCGT
CCCTTTTATT CGGGCAGGAT GAACTCGGAA AGCAGCCAAT CCTCAGCAGA ATCAAGCCTT
AAGGCAGAGC TTGATGGGCG TATTCAAAAC ACCCTGGCCG ACTGCGACGG CAATATCAGT
GAAGCGGCTC GCCGCCTTGG GGTAAGCCGC AACCTGATTT ACCGCAGTCT TAAGCGTACC
GACAGTTAG
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| Protein sequence | MKSAVQPWLA DSWRRSEGAG LSETRPGELK LSRVELDERC ERHRQLIALV ESEALPLFTR
LMAHTDSRLI LSDAEGFVLR HWGLSRYSDR LANVALDCGV NWLEEHKGTN AIGTALRAKE
ALSVVGEQHF CRPHRFMSCT ASPIFSPSGE LIGALDITSE RLKHNQQTLL LISSLAQQVE
TALLCSLPGG RFRVDLAASR QLLSSGWQGI LIADDEGRLL GLNPMARQYL GGASPGMQLG
ELLGDDWRAQ QAQCLRGELH LATSAIGEGA LWIQTNKASS LHGVKPLRFH DPQLETAWQQ
ARKVVSRKIP LLVQGETGVG KEHFVRQLYQ DSRLDGELVA VNCAALPTEL IEAELFGYQG
GAFTGASRQG HLGKVRQADG GFLFLDEIGE LPLAAQGRLL RVLQEREVTP VGGLKSHRVD
IQVVAATHMD LAEMVRDGRF REDLYFRLNG LQVSLPPLRQ RADKSRLIHK LHRQYRVNPP
GDEQRLCPQL LALLEAYAWP GNLRELDNLM QVACLMAEGE RELSQAHLSD AHRRALMQAR
PFYSGRMNSE SSQSSAESSL KAELDGRIQN TLADCDGNIS EAARRLGVSR NLIYRSLKRT
DS
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