| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3408 |
|---|
| Symbol | |
|---|
| ID | 4605655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 4033138 |
|---|
| End bp | 4034487 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639782828 |
|---|
| Product | GGDEF family protein |
|---|
| Protein accession | YP_929280 |
|---|
| Protein GI | 119776540 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3452] Predicted periplasmic ligand-binding sensor domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAGTA CCCATTTAGC CCGTACCAAA CTCTGGATTG TGGCGTTCGC CATTGTGTAC
TGGTTCCTGT CATTGTTTAC GGTGGAATAT TTACACCGCA GTTACTTAAG GGATTATCTG
GCTGAACAAC AACAATGGTT TTCGCAAAAG TTGGCCCTTA TCCGGGCCAA CATCGAGGCC
AAGGTGAATG CCGACATTTT GTTGGCAGAC AGTCTTGCAA CCATTTTGAG CTTTAATCCC
GACGTCCCCT ACAGCAAATG GACTTTGCTC GCAGGCCAAC TGGCCAGCAA GGGTGAATAT
ATTCGCAGCA TCAGTATTGC CCCCAATGAT GTGGTTGCTC TGGTGTATCC GCTGGCCGGT
AATGAGTCTG TGATGGGGCT TGATTTTCGG GAAACCCCGG CGCAGATGCC GGCGGTGCTG
GAGGCGAGGA TGTCCCGACA AATCACCCTC GATGGTCCCA TCACACTGAT CCAGGGGGGA
ATTGGCTTGA TTGCCCGTGC GCCTGTGTTT GCCGACCCGC CCACCAATAC CCAATACTGG
GGCGTTTGCA GCATAGTGAT AGATCTCGAC CGCCTGATAA ACAGTATTCG GGACGTTGAT
CTGGGTGAAG GCATGACGCT GGGCATTCGG ACGCTGCTGT ATCCCGATAA ACGTGGTCCC
ATATTCATTG GGCAAAGCAG CGACTTCGAC AATGCGCGGG CTGTTGCTCA GGTACATTTA
CTGGGGGCCA CCTGGGAGAT TGCGCTGGCC GAGCCAGCAG AGTTAAGGTC CTGGGGTGCA
ACCAATGTGG TGCGTCTCAT CGGATACTGT GTAACCCTGT TTATCTTCCT GAGCTTTCTG
ATGGTTTCCA ATGCCTACCG TATGGCCCGT CTGGTGTCAT TGCAGGATGT GCTCACAGGT
TTACCAAACA GGCGATTTGC TATGTCGCTG CTCAATAAGC TTATTCAGGC ACCTAACGGT
CGTTTTACCG TTATTAACGT GGATCTCAAT TATTTCAAGC AGGTGAATGA TAGTTTTGGT
CATGCCGCCG GCGATGCCAT GTTAAAGGCG GTCGCCAAAC GCATGCAGTC AGTGCTGCGA
AACAGCGACA TGGTTGCCCG ATTGGGAGGT GATGAATTTT TACTGATTTT GCCCCGATTA
ACCTCTCCCG CTGATATCAG CCATGTACTG ATGAAGGTTC GCCATGCGGC CTGCGAGCAG
CCGCTGCAAA TGGCAGACAT CACCCTCAAT ATCAGTATCA GTATGGGGGC GGCCCGGTAT
CCTGAGGATG GACAGGATAT CACTGAATTG CTGCATGTTG CCGACAAGGC CATGTACGAA
GACAAGCAGC GCATCAAAGG GGAAAGATGA
|
|---|
| Protein sequence | MQSTHLARTK LWIVAFAIVY WFLSLFTVEY LHRSYLRDYL AEQQQWFSQK LALIRANIEA
KVNADILLAD SLATILSFNP DVPYSKWTLL AGQLASKGEY IRSISIAPND VVALVYPLAG
NESVMGLDFR ETPAQMPAVL EARMSRQITL DGPITLIQGG IGLIARAPVF ADPPTNTQYW
GVCSIVIDLD RLINSIRDVD LGEGMTLGIR TLLYPDKRGP IFIGQSSDFD NARAVAQVHL
LGATWEIALA EPAELRSWGA TNVVRLIGYC VTLFIFLSFL MVSNAYRMAR LVSLQDVLTG
LPNRRFAMSL LNKLIQAPNG RFTVINVDLN YFKQVNDSFG HAAGDAMLKA VAKRMQSVLR
NSDMVARLGG DEFLLILPRL TSPADISHVL MKVRHAACEQ PLQMADITLN ISISMGAARY
PEDGQDITEL LHVADKAMYE DKQRIKGER
|
|---|
| |