| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3369 |
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| Symbol | |
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| ID | 4605616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3994976 |
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| End bp | 3997033 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639782789 |
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| Product | type IV pilus biogenesis protein PilQ |
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| Protein accession | YP_929241 |
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| Protein GI | 119776501 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000110691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATCTT CTGCCGCGTT CATAACACGC ACCAACAAGC CGGGGTTGGC AAAAGCCTTG
GTAGGTATTG CGTTGTTTTT CGGTGTAACC ACAGCAGCCG TAGCGGCCAA TCGGCTGGTC
GATGTTAAAT ATCACTCGGT GATAGACAGC CAATTGGAAC TCGAGTTGGT GTTTGAAAAC
CCCATTGTTG AGCCTGAGAT CAATCTCAAT GCGACACCGG CTCAAATACT GCTTTCATTT
GATGACAGTA TTTCCGGACT GGCGACAAAC GCACTGCCAG TTAACCGAGG CGGTGTCACA
GAGGTGAATA CTCAGCAGCA GGACTCAGAT TTAGTGGTTG GCGTGAATCT GTCCAAGGTA
CTTCCTTACC AAGGTGCCGT GGTCGGTAAC AGCTATCGCT TAACGGTAAA TGATGCGGTG
GTTTCCAAAG CCACTGATAC CAATTCGTCA TCCAGTGCTT ACGTTAACGG CATTAAAAAT
ATTGATTTTC GTCGTAACGG TAAGGGTGGC GGCGAGCTTA TTGTTCAGCT GAATAACACC
AAGGTTGCGG CCAATGTCGA ACAAATTGGC GCCAAGTTAG AGGTGAAGTT TTTTAACACA
GACATTCCAA AAGACATGTT GTATGTCATG GATGTGCAGG ACTTTGCTAC TCCGGTAAAG
AGCTTTGAAA CTTTTAAGGA AGACTTGGTT ACCCGTATTC AGGTCGATAT TGGCGGTGAG
TACGAATACA ACTACGTTCA GGAAGCCAGT CAGTTCAAAC TGTCAATGAA CAAGGTTGTA
CGTCAGGCAT CTGTGAAGCA GGAAAAGAAA TATAACGGCA AGACTTTGTC GTTGAATTTC
CAAAATATTT CTGTGCGTAC CGTGCTGCAG TTAATTGCCG ACTACAACAA CTTCAATCTG
GTAACCAGTG ATTCGGTTCA GGGCGACATT ACCTTGGTTC TGGACGACGT TCCGTGGGAC
CAAGCACTCG ATTTAATCCT GAAAACTAAA GGGCTGGATA AACGCATTGA AGGTAACATC
CTGATGGTCG CTCCAGCTGA AGAGCTTGCC GTACGTGAAA GTATGGAACT GCGCAACCAA
CAGGAAGTGC AGGAGCTGGC GCCACTCTAT TCCGAGTACA TGCAAATCAA CTACGCCAAA
GCGACTGATA TTGCAGAGCT GCTGAAAAGC GAAGGTTCGA GCCTGCTTAG TGATAGAGGT
AGTGTCGCGG TTGATGAGCG CACTAACACT CTGCTGGTTA AAGATACTGC TGAGACGCTG
GTAAATGTGC AGCGCATGAT AGAAGTGCTT GATATCCCAA TTCGTCAGGT ACTGATAGAA
TCCCGCATGG TGACCGTGAA GGATAACGTC GCGGAAGACT TGGGTATCCG TTGGGGGGTC
ACCGATCAGC AAGGCACCAA GGGGACCTCG GGTTCACTCG AAGGTGCTGA GAGTATTGCT
GGCGGCGTCA TTCCGGCCAT CAGCGACCGT TTGAATGTTA ACTTGCCAGC GCCCACCAAT
GCCGCCAGTA TTGCTTTTCA CGTCGCAAAA CTTGCCGATG GCACCGTATT GGACATGGAG
CTAAGTGCAT TAGAGCAGGA AAACAAGGGT GAAATTATAG CAAGCCCGCG TATCACCACC
TCGAATCAAA AAGCTGCGTA TATCGAGCAG GGTGTTGAAA TTCCTTATGT ATCAGCCTCT
TCCAGCGGTT CTACGACGGT TGAGTTCAAG AAGGCGGTGC TATCTCTTCG CGTTACGCCG
CAAATCACTC CGGATAATCG AGTTATTCTG GATTTGGAAA TCACCCAAGA CAGTCGCGGT
GAAACAGTAG ATACTGCGAC CGGCCGCGCT GTGGCAATCG ATACGCAGCG TATTGGTACT
CAAGTGCTGG TAGACAACGG TGAAACCATA GTGCTGGGTG GTATCTACCA GCAAAATCTT
ATCAGCCGCG TGAGCAAGGT TCCGGTCTTG GGTGATATTC CCCTGGTGGG ATTCCTGTTC
CGCAACACGT CAGATAAAAA TGAACGTCAG GAACTGCTTA TCTTCGTGAC GCCTAAAATC
GTGACAGAAA AAATCTGA
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| Protein sequence | MESSAAFITR TNKPGLAKAL VGIALFFGVT TAAVAANRLV DVKYHSVIDS QLELELVFEN
PIVEPEINLN ATPAQILLSF DDSISGLATN ALPVNRGGVT EVNTQQQDSD LVVGVNLSKV
LPYQGAVVGN SYRLTVNDAV VSKATDTNSS SSAYVNGIKN IDFRRNGKGG GELIVQLNNT
KVAANVEQIG AKLEVKFFNT DIPKDMLYVM DVQDFATPVK SFETFKEDLV TRIQVDIGGE
YEYNYVQEAS QFKLSMNKVV RQASVKQEKK YNGKTLSLNF QNISVRTVLQ LIADYNNFNL
VTSDSVQGDI TLVLDDVPWD QALDLILKTK GLDKRIEGNI LMVAPAEELA VRESMELRNQ
QEVQELAPLY SEYMQINYAK ATDIAELLKS EGSSLLSDRG SVAVDERTNT LLVKDTAETL
VNVQRMIEVL DIPIRQVLIE SRMVTVKDNV AEDLGIRWGV TDQQGTKGTS GSLEGAESIA
GGVIPAISDR LNVNLPAPTN AASIAFHVAK LADGTVLDME LSALEQENKG EIIASPRITT
SNQKAAYIEQ GVEIPYVSAS SSGSTTVEFK KAVLSLRVTP QITPDNRVIL DLEITQDSRG
ETVDTATGRA VAIDTQRIGT QVLVDNGETI VLGGIYQQNL ISRVSKVPVL GDIPLVGFLF
RNTSDKNERQ ELLIFVTPKI VTEKI
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