| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3367 |
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| Symbol | |
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| ID | 4605614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3993164 |
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| End bp | 3994243 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639782787 |
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| Product | 3-dehydroquinate synthase |
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| Protein accession | YP_929239 |
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| Protein GI | 119776499 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0337] 3-dehydroquinate synthetase |
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| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0475831 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAAA TTCAGGTTGA TTTGGCAAAT CGAAGTTATC CGATCCACAT TGGCCCGAAT
TTGTTTGAAG ATCAGGAGCT CTTTGCGCCT GTGGTGAGTG GCAAAAAAGT ACTCGTTGTC
AGTAACGAGA CGATTGCTCC CCTCTATCTC GATAAGATCA GTGCCACCCT GTCCGCTCGC
GCGGCTCAGG TGGCTTCTGT GATCCTGCCT GACGGCGAGC AATACAAAAC ACTCGACTAT
CTCAATGAGA TTTTTGACGC TCTGCTTGAA GGAAATTTTG CCCGCGATTG TGTTCTGGTT
GCACTCGGTG GTGGTGTGAT TGGCGATATG ACCGGGTTTG CTGCGGCCTG TTATCAACGC
GGTGTTGATT TTATTCAAAT TCCTACCACG CTGTTATCCC AGGTCGACTC CTCTGTGGGT
GGCAAAACTG CTGTGAACCA TCCTTTGGGT AAAAACATGA TAGGAGCCTT CTATCAACCC
AAATTGGTGG TCATTGATAT TAATTGCCTG AAAACTCTGC CAGCCAGAGA GTTTGCAGCC
GGTATGGCAG AGGTGATTAA GTACGGCATT ATTCGTGACA GTGAACTCTT TACCTGGTTG
GAACAAAACG TTTCAGCGCT TAAAGCACTG GACCAGGATG CCATTATCCA CGTTATTGCC
CGCTGCTGCG AAATCAAAGC CGAGGTAGTA TCAGAAGATG AAACAGAGCA GGGCGTTCGC
GCTTTGCTCA ATCTGGGACA CACCTTTGGT CATGCCATTG AAGCCGAAAT GGGCTATGGC
AATTGGCTGC ATGGCGAAGC TGTTGCCGCT GGCATGGTAC TTGCTGCACA AACTTCGGTA
ACACTGGGGC TAATCGATAA GTCAATTCTT TGTCGTATTG CGGCACTTAT TCAGGCATTC
GATTTGCCCG TCCAGGCTCC GGAGTCCATG GACTTTAATA GCTTTATTAA GCATATGCGG
CGAGATAAAA AGGTATTGGG TGGCCAGCTC AGGTTGGTTT TGCCGTTGGG CATTGGCGCC
GCTGAAGTCA GCAGCCAGGC CTCTGATGCC GAGCTGGCAG AGGTCATTCG CCGCCCCTGA
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| Protein sequence | MKQIQVDLAN RSYPIHIGPN LFEDQELFAP VVSGKKVLVV SNETIAPLYL DKISATLSAR
AAQVASVILP DGEQYKTLDY LNEIFDALLE GNFARDCVLV ALGGGVIGDM TGFAAACYQR
GVDFIQIPTT LLSQVDSSVG GKTAVNHPLG KNMIGAFYQP KLVVIDINCL KTLPAREFAA
GMAEVIKYGI IRDSELFTWL EQNVSALKAL DQDAIIHVIA RCCEIKAEVV SEDETEQGVR
ALLNLGHTFG HAIEAEMGYG NWLHGEAVAA GMVLAAQTSV TLGLIDKSIL CRIAALIQAF
DLPVQAPESM DFNSFIKHMR RDKKVLGGQL RLVLPLGIGA AEVSSQASDA ELAEVIRRP
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