| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3309 |
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| Symbol | |
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| ID | 4605556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3938306 |
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| End bp | 3939292 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639782729 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_929181 |
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| Protein GI | 119776441 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.647593 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGCCT TCGAGTTTCA GCAATTTGTT GAACCCTGTG TGCACCTGGT GCTGGCAATG
ATGGTGCTTG TGCTGAACCG CTATAAGGCG TCGTTCAAGC TCACACACCA GGTGCTGGTG
GTGGCCTTTA TCATGGCCCT GGTGGGGATA GTCGGCCTGA CGCGTTATGG GCTCTTCAGT
GCCGGGTTGA TCTGGTTGCT GTTTTCCGCT TTGAGTATGA CCTTTTTTTT CCCCCGCCTC
GCACGCAAAC TGATTATCGC CTTTGTTTGC ACGGCACTGT TCTTCGCCCT GGCCCATTCC
CGGCAGTGGT TTGACATCAC CAGGACTGTC AGCCCGGAGA ACGCCGCCAG AAGCATTGTG
GTGTGGTTGT CGGTCATACT GCCATTTGCA ATTTTGTTGT ATTCCTTTTC CAAAGCCGTG
GGTGATGCCT ATAAAGAAAT GCGCCAGGAT AAGCTCAATC TTGGCATTAG AAACAAAGAA
TTACACAGCA AGGCCCACAC GGACACCCTA ACTGAGCTCC CCAACAGGGC CTTTTTTTAC
CAACAACTGT TACAGAAAAC CCAGCAACCG GGGCTGGCAA ACGCCGGCTT GGCGCTACTG
TTTATCGACC TGGATGGATT TAAAGCGATT AACGACACCT GGGGGCACGA GGCAGGCGAC
ACAGTACTGC GTATTACCGC CTGGCGCATG CAGCATCGGC TGCGCGACTC TGACATTATT
TGCCGTCTTG GGGGTGATGA GTTTGTGCTG CTGTGTAACA ACATTAGTTC AAAAGCGGCT
TTGGCGAGTT TCGCCGAGCA AATCAATGTC ACTGTGACTG CGTCTATCGA TTTGCCCGAA
ACGCTGGTGA ATTTGTCCTG CAGCATCGGC GGCGTATTGC TCCCCGAAGA TGGCAGCGAT
ATCGATGCCC TGCTTTCTCT GGCAGACAAG CGTATGTACA GGGCCAAAAA GGCCGGGAAA
AACCAATACT GCTTAACGGA CGAGTAA
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| Protein sequence | MRAFEFQQFV EPCVHLVLAM MVLVLNRYKA SFKLTHQVLV VAFIMALVGI VGLTRYGLFS
AGLIWLLFSA LSMTFFFPRL ARKLIIAFVC TALFFALAHS RQWFDITRTV SPENAARSIV
VWLSVILPFA ILLYSFSKAV GDAYKEMRQD KLNLGIRNKE LHSKAHTDTL TELPNRAFFY
QQLLQKTQQP GLANAGLALL FIDLDGFKAI NDTWGHEAGD TVLRITAWRM QHRLRDSDII
CRLGGDEFVL LCNNISSKAA LASFAEQINV TVTASIDLPE TLVNLSCSIG GVLLPEDGSD
IDALLSLADK RMYRAKKAGK NQYCLTDE
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