Gene Sama_3298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3298 
Symbol 
ID4605545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3920808 
End bp3925292 
Gene Length4485 bp 
Protein Length1494 aa 
Translation table11 
GC content56% 
IMG OID639782718 
Productsensory box protein 
Protein accessionYP_929170 
Protein GI119776430 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.217559 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTCGAG CACTATTTTG CGCTCTGTTG AGTTTGATTC TGCTGTTTGG CACCGTACCC 
GCCAGCGCAG AACACGGCAG CTATCACTAT CACAACACTC TGGAATTTCA GCATTTCAGC
AGCAGTGACG GCCTGAATCA AAACACCATC ACCCGCCTCT ACACCGATAA GGCTGGCATG
CTCTGGGCAG GCAGTCAGGA TGGTCTGCAC TATTTCAACG GCCAGGAATT TGGCGTCTTC
TTACCCGATC CCAGCAATAC CAACAGCCTG TCGGAAGGCT ACATCACAGA CATAGTACAG
GACCCGGAAG GCTTGCTGTG GGTCAGCACC TACACCCAGG GTCTGAACCG TTTGGATCTG
CAAACCGGCA AGTTTACTCG CTACGGTGAA GCCGATGGTT TAAGTGAGCT CAGGGTCACC
CGTCTGGCTG TGATAGGCGA CAGCCTTTGG ATAGGCACAG AAAGGGGCTT GTTTGCCATG
CAGCGCAAGA GTGGCCAAAT TCGCCCCATT CCCCTTGGCA ATGCCCTGAC ACCCAAAATT
ACCAGCCTGG GCAATATCGA AGACGAATAT TTATTGGTGG GCACCCAGGC CCACGGCACC
TATGCCATCA GCAGCAACAA CATAGTTAAG CTCAAGTTGC CCTCCACCAG CCCGGTCAAC
CAAATCCACA GCATCGGCAA TGTCGCTTAT CTCGCCATCG GCAAAGAGCT GTGGCAGTAC
GAGATGGATA CCCATAGTGC AAAAATACTC TGGCAGAGTG AACCCCAGGG GTTCTTCCAT
GGTGATATCC GGGACTTTAC CCTGGCCTCG GCCGAGGAAA TCTGGGCGAT AGCACCGGGT
GCCGGTCTGA TTGAGCTGGA AAAAACCGAC CGTTGGCGTG CCCGCTACCA CAGAAACGAC
TCCCGCAGCT TTCGCGACAT CAGCGACAAC AATCTGATGA GTGTCCTGCT CGACCCCAAC
GGAGTGCTCT GGCTCGGTGG TAGTTATTCG GGACTGGATA AAATCAATAT TCGCCGCCAG
TACTTCGATC ACCTGTTCGA CAACAGCGTG GCATTACCGA AACAAATCAA TATGGTGCGG
GCCATCTATC AAACCCGCGA AGGAGTCGTC TGGATTGGCA CCGAGGGGGC AGGCATAAAA
ACCCTCAAGC CCAACGAAGA TAACTACCAA TACCATACCC ATCTGTTTGC CGATGCCCTT
AACCTTGTCC CCGAAGCCAT TTCTCTGGTG GTGCGCGACA TTATCCAGGA TAAAGAGGGT
TCGCTCTGGT TTGCCAGTAA TTATGGGCTG GGGCATCTGG CTACTTCCGG TGCCTTCAGG
CTGCTGCATC CTCCAGAGCA TGATGGCCAG GGGCGCACCC TGGCGCTAGA CAAACACGAT
ACCCTCTGGG TGGCGTTCGA TGAAGGGCTG TTTTACATGC CTATTTCGGG GACAGAGCTC
AAGCGCTTCC CCCTGGATGA AACACTGGGC GACAAGTTGG CGGTGCGCCA GATTCTGGGG
CTGGAATTTA TCGATGACTG GCTCTGGATT GGCACCCTGG ATGGTCTTAT CCGCCTCAAT
CCCAACACCA ATGACATTCA GGTGTTTACC CACGACCCGG CCAACAGCAG CAGCCTTGGC
AACAATCGTA TTCGCGATAT CTACAGCGCG GCCAATGGCG ACGTCTGGGT GGGCACCCAC
GGGGGGATCA GCATTTTGCG TCAGGAGCAG GACGGCTGGC AGATTCGCCA TCTGACCAGC
AATGAAGGGG TGCCCAGCGA TACCATTTAT GCCATTTTGG AAGACAAACA GGGGCAATTC
TGGTTTTCCA GTAACGCGGG CATCAGCCGC TATACCCCAG GTGAAGACAG CATCATTACG
TTCAACAAAT TCGAGGGGCT GCAGGAGCAG GAATATAACG GCGGGGTGAA ATTTGTCGGC
CAGGATGGCT ATTTCTGGTT TGGCGGCATT AACGGCATTA CCCGCTTTCT GCCAGAGCAA
ATTCCCAAGA GCCGCCAGGA GCCCCCGCTG GCCTTAACCA GCTACAGCCT GGGAGGCAAG
CGCACCCGGA TACTGGACCT GACCACACCG CCCAGCGTCG AGATGAACTT TGAAGACAAG
GTTGTCAGCT TTGAAGTCAC ATCGCTGGAT TTTTCCTATC CGGGCGTTGA CCGATTTGCG
TACTATTTAC AAGGGTTTGA CAGCCAGTGG CACAGTGCAC AGGCCCAAGC GCAAATCACC
TATACCAACC TGAGCCCCGG CAATTACCTG CTCAGGGTTC GCCATGGTCT GGCTGCCAAT
CCTTTGGGTT ACCAAATCCT TACTGTCCCC TTAACCGTGG TGGCTCCCTG GTATCGCACC
CCTCCGGCCT ATGTGCTTTA TACCCTCACG CTTGTCGCCA TCCTGGGTTG GTTCTGGCGC
GAACGGCGCG TTAAGCGGCG TCAAAGACGC GAATTTGAAA CCAGCATCCG CACCTCGGAA
GAGCGACTCA AACTGGCACT GTGGGCCTCG GGCGATGGTA TGTGGGACTG GGACATTCCC
AGCGGTCAGG TGTTCCGCAC CCGTATGCAT CCCCACACTG AGCAACAGCT CAATGGCCCT
GTATTGCTGG ACCGTATCCA CCCGGAAGAT AAGCCCAGGG TGCTCCATGC CATCGAACAG
CATATTGATG GCAGCCGCGC CTTCTATGAG GCCGAATACC GCATTGAAAA CAAACCCGGC
CACTGGATCT GGATCACGGA CAGGGGCAAG GTGGTAGAGC GGGACAAACA AGGCAAGCCG
GTACGTATGG TGGGCACCCA CAAGGACATC ACCAGTCGCA AAAACGCCGA AAACGAACTC
AGGCTGTCGG CTCAGGTACT GGCCAGCATG AACGAAGCCG TGGTGGTGGG TGGCCTGGAT
TACCGTATCG CCTCGGTCAA CCCGGCTTTT AGCCTGATAA CCGGCTTCAA CCCGGAACAG
GTGCAGGGCA AGCACTTCCT GTTTTTAACC CATGATCGCA AACAGCGACA TATTTATGAA
GCCATAGAAC AGCAGCTGCT GCGCAATAAA CACTGGGCCG GAGAGCTGAA AATCCGCACC
CGGGATCAGC GCGCCATTCT GATTTGGCTC GAAATCAATC AGGTACTCGA CAGTAAAGCC
GAAGCCAGCC ACTTTGTGGC CGTGTTTACC GACATTACCG ACCGCAAAAA GGCCGAAGAG
GATCTGCGCC TGCTGGCCTC CTACGACCCG CTCACCAACC TGCCCAACCG CACCCTGTTC
CAGGACCGGC TGGATCATGC GCTGGCCCAG GCCCACAGAA CCGGCAACAT GGTGGCCTTG
CTGTTTTTGG ATCTCGACCG CTTTAAACAC ATCAACGACT CCATGGGGCA CCATATCGGC
GATCTGTTGC TCAAGGCCGT TGCCCACCGG CTGCAAAACT GTGTGCGCGA AGGGGACACA
GTTGCCCGCC TCGGTGGTGA TGAATTCACC ATCATCCTGG AAGGCGTTGC CAAGACCAAG
GCCGCCACTG TGATTGCCGA GAAGCTGATT CGCGCCTTCC AAACGCCTTT TATTCTGGAA
GATCAGGCGC TGAATATTTC ACCCTCCATA GGCATCAGCC TCTACCCCAT GGACGCCAGC
GACAGTACCT CACTGGTGAA ATACGCCGAT ACCGCCATGT ATCACGCCAA ATCGCTGGGG
CGGAACAACT TCCAGTTTTA CACCTTAAGG CTGAACGAAT ACGCCATGCG CCATGTTCAG
CTGGAGGCCG GTATCAAGCA GGCCATCGTC CGTCAGGAAC TCAGTTTAGT GTTCCAGCCC
AAATTCAGGG TCAGCGATGG CAGCATCACA GGCTTTGAGG CACTGCTGCG CTGGAACAGC
AAGGAGCTGG GGCCCATTTC CCCAGCGGAA TTTATTCCGC TGGCCGAAGA AATTGGCATC
ATCAATCAGC TGGGGCACTG GGTCGTCAAC GAGGCCTGTC GCCATATGGC GCAATTTGCT
GCCGCAGGCT TTGATGACCT GCATGTGGCG GTTAACCTGT CGGCCCGCCA GCTCAAGGCA
GATATTCTGT CCACCATCGA AGTAGCCCTG GCGGTGGCAG GCTTACCGGC AAAATGCCTT
GAGCTGGAAC TGACAGAGTC GATGATCATG AAAAGCCCAC AGGAATCTGT GGCCGTATTG
CAGCGGCTCA AGGCCCTGGG GGTGTCACTG GCAGTGGATG ACTTTGGCAC CGGCTACTCG
AGCCTGGCGT ATCTCAAGCG CTTCCCGCTG GACACGTTGA AAATCGACCG GGAGTTTGTG
CGCGACATCA GCACCGACCC GGACGATGCC GCCATCACGG GTGCCATTAT CGCCCTCGCC
CACAGTCTGG AATTGAATGT CGTAGCCGAA GGGGTTGAGA ACGAGGCCCA GCTGGAACAC
CTGCGCAAAC ACGGCTGCGA TCAGGTGCAG GGCTTCCTGC TGGGCAAACC CATGGCCGCA
CGGGATGCCA TGGCGCTGCT GAAGAGCCGT ACCCTGAATA CCTGA
 
Protein sequence
MFRALFCALL SLILLFGTVP ASAEHGSYHY HNTLEFQHFS SSDGLNQNTI TRLYTDKAGM 
LWAGSQDGLH YFNGQEFGVF LPDPSNTNSL SEGYITDIVQ DPEGLLWVST YTQGLNRLDL
QTGKFTRYGE ADGLSELRVT RLAVIGDSLW IGTERGLFAM QRKSGQIRPI PLGNALTPKI
TSLGNIEDEY LLVGTQAHGT YAISSNNIVK LKLPSTSPVN QIHSIGNVAY LAIGKELWQY
EMDTHSAKIL WQSEPQGFFH GDIRDFTLAS AEEIWAIAPG AGLIELEKTD RWRARYHRND
SRSFRDISDN NLMSVLLDPN GVLWLGGSYS GLDKINIRRQ YFDHLFDNSV ALPKQINMVR
AIYQTREGVV WIGTEGAGIK TLKPNEDNYQ YHTHLFADAL NLVPEAISLV VRDIIQDKEG
SLWFASNYGL GHLATSGAFR LLHPPEHDGQ GRTLALDKHD TLWVAFDEGL FYMPISGTEL
KRFPLDETLG DKLAVRQILG LEFIDDWLWI GTLDGLIRLN PNTNDIQVFT HDPANSSSLG
NNRIRDIYSA ANGDVWVGTH GGISILRQEQ DGWQIRHLTS NEGVPSDTIY AILEDKQGQF
WFSSNAGISR YTPGEDSIIT FNKFEGLQEQ EYNGGVKFVG QDGYFWFGGI NGITRFLPEQ
IPKSRQEPPL ALTSYSLGGK RTRILDLTTP PSVEMNFEDK VVSFEVTSLD FSYPGVDRFA
YYLQGFDSQW HSAQAQAQIT YTNLSPGNYL LRVRHGLAAN PLGYQILTVP LTVVAPWYRT
PPAYVLYTLT LVAILGWFWR ERRVKRRQRR EFETSIRTSE ERLKLALWAS GDGMWDWDIP
SGQVFRTRMH PHTEQQLNGP VLLDRIHPED KPRVLHAIEQ HIDGSRAFYE AEYRIENKPG
HWIWITDRGK VVERDKQGKP VRMVGTHKDI TSRKNAENEL RLSAQVLASM NEAVVVGGLD
YRIASVNPAF SLITGFNPEQ VQGKHFLFLT HDRKQRHIYE AIEQQLLRNK HWAGELKIRT
RDQRAILIWL EINQVLDSKA EASHFVAVFT DITDRKKAEE DLRLLASYDP LTNLPNRTLF
QDRLDHALAQ AHRTGNMVAL LFLDLDRFKH INDSMGHHIG DLLLKAVAHR LQNCVREGDT
VARLGGDEFT IILEGVAKTK AATVIAEKLI RAFQTPFILE DQALNISPSI GISLYPMDAS
DSTSLVKYAD TAMYHAKSLG RNNFQFYTLR LNEYAMRHVQ LEAGIKQAIV RQELSLVFQP
KFRVSDGSIT GFEALLRWNS KELGPISPAE FIPLAEEIGI INQLGHWVVN EACRHMAQFA
AAGFDDLHVA VNLSARQLKA DILSTIEVAL AVAGLPAKCL ELELTESMIM KSPQESVAVL
QRLKALGVSL AVDDFGTGYS SLAYLKRFPL DTLKIDREFV RDISTDPDDA AITGAIIALA
HSLELNVVAE GVENEAQLEH LRKHGCDQVQ GFLLGKPMAA RDAMALLKSR TLNT