| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3298 |
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| Symbol | |
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| ID | 4605545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3920808 |
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| End bp | 3925292 |
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| Gene Length | 4485 bp |
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| Protein Length | 1494 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639782718 |
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| Product | sensory box protein |
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| Protein accession | YP_929170 |
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| Protein GI | 119776430 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.217559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCGAG CACTATTTTG CGCTCTGTTG AGTTTGATTC TGCTGTTTGG CACCGTACCC
GCCAGCGCAG AACACGGCAG CTATCACTAT CACAACACTC TGGAATTTCA GCATTTCAGC
AGCAGTGACG GCCTGAATCA AAACACCATC ACCCGCCTCT ACACCGATAA GGCTGGCATG
CTCTGGGCAG GCAGTCAGGA TGGTCTGCAC TATTTCAACG GCCAGGAATT TGGCGTCTTC
TTACCCGATC CCAGCAATAC CAACAGCCTG TCGGAAGGCT ACATCACAGA CATAGTACAG
GACCCGGAAG GCTTGCTGTG GGTCAGCACC TACACCCAGG GTCTGAACCG TTTGGATCTG
CAAACCGGCA AGTTTACTCG CTACGGTGAA GCCGATGGTT TAAGTGAGCT CAGGGTCACC
CGTCTGGCTG TGATAGGCGA CAGCCTTTGG ATAGGCACAG AAAGGGGCTT GTTTGCCATG
CAGCGCAAGA GTGGCCAAAT TCGCCCCATT CCCCTTGGCA ATGCCCTGAC ACCCAAAATT
ACCAGCCTGG GCAATATCGA AGACGAATAT TTATTGGTGG GCACCCAGGC CCACGGCACC
TATGCCATCA GCAGCAACAA CATAGTTAAG CTCAAGTTGC CCTCCACCAG CCCGGTCAAC
CAAATCCACA GCATCGGCAA TGTCGCTTAT CTCGCCATCG GCAAAGAGCT GTGGCAGTAC
GAGATGGATA CCCATAGTGC AAAAATACTC TGGCAGAGTG AACCCCAGGG GTTCTTCCAT
GGTGATATCC GGGACTTTAC CCTGGCCTCG GCCGAGGAAA TCTGGGCGAT AGCACCGGGT
GCCGGTCTGA TTGAGCTGGA AAAAACCGAC CGTTGGCGTG CCCGCTACCA CAGAAACGAC
TCCCGCAGCT TTCGCGACAT CAGCGACAAC AATCTGATGA GTGTCCTGCT CGACCCCAAC
GGAGTGCTCT GGCTCGGTGG TAGTTATTCG GGACTGGATA AAATCAATAT TCGCCGCCAG
TACTTCGATC ACCTGTTCGA CAACAGCGTG GCATTACCGA AACAAATCAA TATGGTGCGG
GCCATCTATC AAACCCGCGA AGGAGTCGTC TGGATTGGCA CCGAGGGGGC AGGCATAAAA
ACCCTCAAGC CCAACGAAGA TAACTACCAA TACCATACCC ATCTGTTTGC CGATGCCCTT
AACCTTGTCC CCGAAGCCAT TTCTCTGGTG GTGCGCGACA TTATCCAGGA TAAAGAGGGT
TCGCTCTGGT TTGCCAGTAA TTATGGGCTG GGGCATCTGG CTACTTCCGG TGCCTTCAGG
CTGCTGCATC CTCCAGAGCA TGATGGCCAG GGGCGCACCC TGGCGCTAGA CAAACACGAT
ACCCTCTGGG TGGCGTTCGA TGAAGGGCTG TTTTACATGC CTATTTCGGG GACAGAGCTC
AAGCGCTTCC CCCTGGATGA AACACTGGGC GACAAGTTGG CGGTGCGCCA GATTCTGGGG
CTGGAATTTA TCGATGACTG GCTCTGGATT GGCACCCTGG ATGGTCTTAT CCGCCTCAAT
CCCAACACCA ATGACATTCA GGTGTTTACC CACGACCCGG CCAACAGCAG CAGCCTTGGC
AACAATCGTA TTCGCGATAT CTACAGCGCG GCCAATGGCG ACGTCTGGGT GGGCACCCAC
GGGGGGATCA GCATTTTGCG TCAGGAGCAG GACGGCTGGC AGATTCGCCA TCTGACCAGC
AATGAAGGGG TGCCCAGCGA TACCATTTAT GCCATTTTGG AAGACAAACA GGGGCAATTC
TGGTTTTCCA GTAACGCGGG CATCAGCCGC TATACCCCAG GTGAAGACAG CATCATTACG
TTCAACAAAT TCGAGGGGCT GCAGGAGCAG GAATATAACG GCGGGGTGAA ATTTGTCGGC
CAGGATGGCT ATTTCTGGTT TGGCGGCATT AACGGCATTA CCCGCTTTCT GCCAGAGCAA
ATTCCCAAGA GCCGCCAGGA GCCCCCGCTG GCCTTAACCA GCTACAGCCT GGGAGGCAAG
CGCACCCGGA TACTGGACCT GACCACACCG CCCAGCGTCG AGATGAACTT TGAAGACAAG
GTTGTCAGCT TTGAAGTCAC ATCGCTGGAT TTTTCCTATC CGGGCGTTGA CCGATTTGCG
TACTATTTAC AAGGGTTTGA CAGCCAGTGG CACAGTGCAC AGGCCCAAGC GCAAATCACC
TATACCAACC TGAGCCCCGG CAATTACCTG CTCAGGGTTC GCCATGGTCT GGCTGCCAAT
CCTTTGGGTT ACCAAATCCT TACTGTCCCC TTAACCGTGG TGGCTCCCTG GTATCGCACC
CCTCCGGCCT ATGTGCTTTA TACCCTCACG CTTGTCGCCA TCCTGGGTTG GTTCTGGCGC
GAACGGCGCG TTAAGCGGCG TCAAAGACGC GAATTTGAAA CCAGCATCCG CACCTCGGAA
GAGCGACTCA AACTGGCACT GTGGGCCTCG GGCGATGGTA TGTGGGACTG GGACATTCCC
AGCGGTCAGG TGTTCCGCAC CCGTATGCAT CCCCACACTG AGCAACAGCT CAATGGCCCT
GTATTGCTGG ACCGTATCCA CCCGGAAGAT AAGCCCAGGG TGCTCCATGC CATCGAACAG
CATATTGATG GCAGCCGCGC CTTCTATGAG GCCGAATACC GCATTGAAAA CAAACCCGGC
CACTGGATCT GGATCACGGA CAGGGGCAAG GTGGTAGAGC GGGACAAACA AGGCAAGCCG
GTACGTATGG TGGGCACCCA CAAGGACATC ACCAGTCGCA AAAACGCCGA AAACGAACTC
AGGCTGTCGG CTCAGGTACT GGCCAGCATG AACGAAGCCG TGGTGGTGGG TGGCCTGGAT
TACCGTATCG CCTCGGTCAA CCCGGCTTTT AGCCTGATAA CCGGCTTCAA CCCGGAACAG
GTGCAGGGCA AGCACTTCCT GTTTTTAACC CATGATCGCA AACAGCGACA TATTTATGAA
GCCATAGAAC AGCAGCTGCT GCGCAATAAA CACTGGGCCG GAGAGCTGAA AATCCGCACC
CGGGATCAGC GCGCCATTCT GATTTGGCTC GAAATCAATC AGGTACTCGA CAGTAAAGCC
GAAGCCAGCC ACTTTGTGGC CGTGTTTACC GACATTACCG ACCGCAAAAA GGCCGAAGAG
GATCTGCGCC TGCTGGCCTC CTACGACCCG CTCACCAACC TGCCCAACCG CACCCTGTTC
CAGGACCGGC TGGATCATGC GCTGGCCCAG GCCCACAGAA CCGGCAACAT GGTGGCCTTG
CTGTTTTTGG ATCTCGACCG CTTTAAACAC ATCAACGACT CCATGGGGCA CCATATCGGC
GATCTGTTGC TCAAGGCCGT TGCCCACCGG CTGCAAAACT GTGTGCGCGA AGGGGACACA
GTTGCCCGCC TCGGTGGTGA TGAATTCACC ATCATCCTGG AAGGCGTTGC CAAGACCAAG
GCCGCCACTG TGATTGCCGA GAAGCTGATT CGCGCCTTCC AAACGCCTTT TATTCTGGAA
GATCAGGCGC TGAATATTTC ACCCTCCATA GGCATCAGCC TCTACCCCAT GGACGCCAGC
GACAGTACCT CACTGGTGAA ATACGCCGAT ACCGCCATGT ATCACGCCAA ATCGCTGGGG
CGGAACAACT TCCAGTTTTA CACCTTAAGG CTGAACGAAT ACGCCATGCG CCATGTTCAG
CTGGAGGCCG GTATCAAGCA GGCCATCGTC CGTCAGGAAC TCAGTTTAGT GTTCCAGCCC
AAATTCAGGG TCAGCGATGG CAGCATCACA GGCTTTGAGG CACTGCTGCG CTGGAACAGC
AAGGAGCTGG GGCCCATTTC CCCAGCGGAA TTTATTCCGC TGGCCGAAGA AATTGGCATC
ATCAATCAGC TGGGGCACTG GGTCGTCAAC GAGGCCTGTC GCCATATGGC GCAATTTGCT
GCCGCAGGCT TTGATGACCT GCATGTGGCG GTTAACCTGT CGGCCCGCCA GCTCAAGGCA
GATATTCTGT CCACCATCGA AGTAGCCCTG GCGGTGGCAG GCTTACCGGC AAAATGCCTT
GAGCTGGAAC TGACAGAGTC GATGATCATG AAAAGCCCAC AGGAATCTGT GGCCGTATTG
CAGCGGCTCA AGGCCCTGGG GGTGTCACTG GCAGTGGATG ACTTTGGCAC CGGCTACTCG
AGCCTGGCGT ATCTCAAGCG CTTCCCGCTG GACACGTTGA AAATCGACCG GGAGTTTGTG
CGCGACATCA GCACCGACCC GGACGATGCC GCCATCACGG GTGCCATTAT CGCCCTCGCC
CACAGTCTGG AATTGAATGT CGTAGCCGAA GGGGTTGAGA ACGAGGCCCA GCTGGAACAC
CTGCGCAAAC ACGGCTGCGA TCAGGTGCAG GGCTTCCTGC TGGGCAAACC CATGGCCGCA
CGGGATGCCA TGGCGCTGCT GAAGAGCCGT ACCCTGAATA CCTGA
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| Protein sequence | MFRALFCALL SLILLFGTVP ASAEHGSYHY HNTLEFQHFS SSDGLNQNTI TRLYTDKAGM
LWAGSQDGLH YFNGQEFGVF LPDPSNTNSL SEGYITDIVQ DPEGLLWVST YTQGLNRLDL
QTGKFTRYGE ADGLSELRVT RLAVIGDSLW IGTERGLFAM QRKSGQIRPI PLGNALTPKI
TSLGNIEDEY LLVGTQAHGT YAISSNNIVK LKLPSTSPVN QIHSIGNVAY LAIGKELWQY
EMDTHSAKIL WQSEPQGFFH GDIRDFTLAS AEEIWAIAPG AGLIELEKTD RWRARYHRND
SRSFRDISDN NLMSVLLDPN GVLWLGGSYS GLDKINIRRQ YFDHLFDNSV ALPKQINMVR
AIYQTREGVV WIGTEGAGIK TLKPNEDNYQ YHTHLFADAL NLVPEAISLV VRDIIQDKEG
SLWFASNYGL GHLATSGAFR LLHPPEHDGQ GRTLALDKHD TLWVAFDEGL FYMPISGTEL
KRFPLDETLG DKLAVRQILG LEFIDDWLWI GTLDGLIRLN PNTNDIQVFT HDPANSSSLG
NNRIRDIYSA ANGDVWVGTH GGISILRQEQ DGWQIRHLTS NEGVPSDTIY AILEDKQGQF
WFSSNAGISR YTPGEDSIIT FNKFEGLQEQ EYNGGVKFVG QDGYFWFGGI NGITRFLPEQ
IPKSRQEPPL ALTSYSLGGK RTRILDLTTP PSVEMNFEDK VVSFEVTSLD FSYPGVDRFA
YYLQGFDSQW HSAQAQAQIT YTNLSPGNYL LRVRHGLAAN PLGYQILTVP LTVVAPWYRT
PPAYVLYTLT LVAILGWFWR ERRVKRRQRR EFETSIRTSE ERLKLALWAS GDGMWDWDIP
SGQVFRTRMH PHTEQQLNGP VLLDRIHPED KPRVLHAIEQ HIDGSRAFYE AEYRIENKPG
HWIWITDRGK VVERDKQGKP VRMVGTHKDI TSRKNAENEL RLSAQVLASM NEAVVVGGLD
YRIASVNPAF SLITGFNPEQ VQGKHFLFLT HDRKQRHIYE AIEQQLLRNK HWAGELKIRT
RDQRAILIWL EINQVLDSKA EASHFVAVFT DITDRKKAEE DLRLLASYDP LTNLPNRTLF
QDRLDHALAQ AHRTGNMVAL LFLDLDRFKH INDSMGHHIG DLLLKAVAHR LQNCVREGDT
VARLGGDEFT IILEGVAKTK AATVIAEKLI RAFQTPFILE DQALNISPSI GISLYPMDAS
DSTSLVKYAD TAMYHAKSLG RNNFQFYTLR LNEYAMRHVQ LEAGIKQAIV RQELSLVFQP
KFRVSDGSIT GFEALLRWNS KELGPISPAE FIPLAEEIGI INQLGHWVVN EACRHMAQFA
AAGFDDLHVA VNLSARQLKA DILSTIEVAL AVAGLPAKCL ELELTESMIM KSPQESVAVL
QRLKALGVSL AVDDFGTGYS SLAYLKRFPL DTLKIDREFV RDISTDPDDA AITGAIIALA
HSLELNVVAE GVENEAQLEH LRKHGCDQVQ GFLLGKPMAA RDAMALLKSR TLNT
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