| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3294 |
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| Symbol | prpB |
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| ID | 4605541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3914095 |
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| End bp | 3914979 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639782714 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_929166 |
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| Protein GI | 119776426 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.203078 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCACA GCGCAGGCAA GCGTTTTCGC GACGCACTGG CACGCTCCAA GCCACTGCAA
ATCGTAGGTA CCACCAACGC CTATTTCGCT CTGATGGCCG AAAAGACCGG CTTTCAGGCT
CTCTATCTGT CGGGCGCCGG GGTGGCTAAC GCCTCTTATG GTCTGCCGGA TCTGGGCATG
ACCTCCATGA ATGATGTGCT GATTGATGCC GGCCGCATCA CCTCGGCCAC CCAGCTGCCA
CTGCTGGTCG ACATAGACAC CGGCTGGGGC GGCGCCTTCA ACATCGCCCG CACCATCAAG
GAATTTGAAA AGGTTGGTGT TGCCGCGGTG CATATGGAAG ACCAGGTGTC GCAAAAGCGT
TGCGGCCACC GCCCCAACAA GGCCGTGGTG AGCACCGAAG AGATGGTTGA CCGCATCAAG
GCCGCCGTGG ATGCCCGCAC CGATGAGAAC TTCGTCATCA TGGCACGCAC CGACGCGGTA
GCCGTTGAAG GGCTGGATGC CGGTATAGAG CGTGCCCAGG CCTATATCGA GGCCGGTGCC
GACATGATTT TTGCCGAGGC CCTGACCGAG CTGCCACAGT ACCGCAAGTT CAAGGACGCG
GTAAAAGCGC CCATCCTCGC CAATATGACC GAATTCGGTC AAACCGAGCT GTTCGACAAG
TCAGCCCTGT ATGAAGCCGG AGCCGATATG GTGCTCTATC CACTCGGCAC CTTCCGCGCC
GCCAACCAGG CCGCCCTTAA GGTGATGCAG GCACTGATGA ACGATGGCCA CCAGCGCAAT
GTGCTCAGCA CCATGCAAAG CCGGAAAGAG CTGTACGAGT TTTTGAACTA CCACAGCTTT
GAAGACACGC TGGACCGCCT CTTTGCTGAA GGCAAAAACA AATAA
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| Protein sequence | MTHSAGKRFR DALARSKPLQ IVGTTNAYFA LMAEKTGFQA LYLSGAGVAN ASYGLPDLGM
TSMNDVLIDA GRITSATQLP LLVDIDTGWG GAFNIARTIK EFEKVGVAAV HMEDQVSQKR
CGHRPNKAVV STEEMVDRIK AAVDARTDEN FVIMARTDAV AVEGLDAGIE RAQAYIEAGA
DMIFAEALTE LPQYRKFKDA VKAPILANMT EFGQTELFDK SALYEAGADM VLYPLGTFRA
ANQAALKVMQ ALMNDGHQRN VLSTMQSRKE LYEFLNYHSF EDTLDRLFAE GKNK
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