| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3286 |
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| Symbol | |
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| ID | 4605533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3903986 |
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| End bp | 3905773 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639782706 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_929158 |
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| Protein GI | 119776418 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCATTG GCGTCAGCAC CCTGTTGGCG CTCGTCACCA TGCTTATCCA GTTTGTGTGG
AACTATCTGG GCGCGGTGGA CAACGCCAAG GCCGAAATTC GTGGTTACAG CGAGCTGATA
TTGCCGTCTA TCGCCCAGGC GTTGTGGGAT GCCGACAGGC CACTGCTGAA TGATCTGGTT
TCGGCTGTGT CGCGTTTGCC CGCTGTCAGC TTTGTTGAAT TGTCCAGCCT CGATGGTTTC
ACTGTGCGTT CGGATAATGC GGCCAATTCG GCGCAGACCA ATCCCAACGC CCGGATTGAA
ATGCCTGTGC TGTTTGAACA GCAGCCAATT GCCACACTGC GGGTGGTTCT CAGCAACAGC
GAAATCTATC GGATGCTGTG GCAGCAGATG GTGTTTCTGG TGCTGGGAAA CGGTATTAAA
ACCCTGGTCA TGGCATTCGT TATTCTATCG CTGCTCAAAC ATTTGGTGAT TGGGCGTCTT
GCCCGTTTAT CGGCCTTTGC CAATACCGTG AGTTTGGCCA ATGGTGAACG TATCAATAAG
CCCTTTTGGC CCGCCAATGA ACAGGATGAA ATAGGCTCGG TGGGCCGGGC ACTTGAGGCC
ATGTACCACA GACTCAGATC AGATTTGGCG CTTATCCGCA TGCAACAGCG CCAGTTGGCA
AGAAGAGGCA GGGCACTGAG CCATACCGTG GCGGCACAGG ACTCACAGCT GAACTGGCTT
GCCAATGCCA ACAGTCTGCT GGCCAAGGTG AGTCTGCAGT TTCTGGCAGC CACCAGTGCG
GATGCCAGCA AAGAGCTGAA TCATTTCACC CGTGAGCTTG GTGCATTGTT GGGGGTTGAG
CGGGTCAGTG TGCTCGAGTT TGTGAAGGGT AAGGCAACCT ATCGCAGCTT TTGGTCATCG
AATGAATCTG ATGCGCCAGC CAGTGAGTTG GTGATTGATA ACCTGCCACT TTTAAAACAA
AAGTTTGGCC ACAGTCATAC GCTGGTCATT GAGGATGTCG AAAGCCTGAA GGATTCGTCA
TCGCAGGAAT ACCGTTATAT GAAGCAACTG GGGATTGTGT CGGTTGCCGG GTTTGCCATT
GCAGATGGTG ACACCCTGTT GGGGGTGCTG TTGGTGGCCA ACCACCGCTT GCCTCTGAAT
TGGAGTCCGG AAAAAACGCA CATACTGACC CAGTTTGCCT CGGCATTGAA TGAGTTGTGG
CTTAGAGAGC GGCACGAAAA CCGAATGTTT GAGCTGCAAC AGGAACTGAT GCGCGCCAAC
ATGCACCTTG CCAGAGAGGC AGTGACAGAT CCCCTGACAG GCCTGACTAA TCGTCGTCCC
TTCACCGAAC GCTTATCGAT GCAGCTTGAA CAGGGGGGCA TACTCCTGAT GGCAGATGTG
GACTTTTTCA AAGGCTACAA CGATACCTAT GGCCACGTGG CCGGGGACGA TGTGTTGAAA
AAGTTGGCAA TGGAACTTCA AGCTTTGTTG TCAGACAGCG CCCTGCTGGC GCGTATTGGG
GGAGAGGAGT TTGCCCTGAT AGCTCCCGTG ATGAGCGAAG CCGAACTTGA GGCATTATGC
GACAGGCTGC TCACCCATGT CCGCAATCTG GCCATAGAGC ACAGGGGATC GCATTTCGGC
ATAGTGACCC TGAGTTTGGG CGCGATAAAC CTGGAGAATA GCAGCAATGT GCGCGATGCC
CTGAGTCAGG CCGATGCCAG TCTCTATTTA GCCAAGCAAC AGGGGCGTAA TCTTGCGGTT
ATCAATGGTC ATGTCAGCCC GGCGGCGAGA CAGATGTCTT CTTCCTGA
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| Protein sequence | MIIGVSTLLA LVTMLIQFVW NYLGAVDNAK AEIRGYSELI LPSIAQALWD ADRPLLNDLV
SAVSRLPAVS FVELSSLDGF TVRSDNAANS AQTNPNARIE MPVLFEQQPI ATLRVVLSNS
EIYRMLWQQM VFLVLGNGIK TLVMAFVILS LLKHLVIGRL ARLSAFANTV SLANGERINK
PFWPANEQDE IGSVGRALEA MYHRLRSDLA LIRMQQRQLA RRGRALSHTV AAQDSQLNWL
ANANSLLAKV SLQFLAATSA DASKELNHFT RELGALLGVE RVSVLEFVKG KATYRSFWSS
NESDAPASEL VIDNLPLLKQ KFGHSHTLVI EDVESLKDSS SQEYRYMKQL GIVSVAGFAI
ADGDTLLGVL LVANHRLPLN WSPEKTHILT QFASALNELW LRERHENRMF ELQQELMRAN
MHLAREAVTD PLTGLTNRRP FTERLSMQLE QGGILLMADV DFFKGYNDTY GHVAGDDVLK
KLAMELQALL SDSALLARIG GEEFALIAPV MSEAELEALC DRLLTHVRNL AIEHRGSHFG
IVTLSLGAIN LENSSNVRDA LSQADASLYL AKQQGRNLAV INGHVSPAAR QMSSS
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