| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3269 |
|---|
| Symbol | |
|---|
| ID | 4605516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3881526 |
|---|
| End bp | 3884597 |
|---|
| Gene Length | 3072 bp |
|---|
| Protein Length | 1023 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639782689 |
|---|
| Product | putative multidrug resistance protein |
|---|
| Protein accession | YP_929141 |
|---|
| Protein GI | 119776401 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTTA CTGACATCTT TATCAAACGG CCGGTGCTTG CCGTTTCGAT AAGCTTCCTT
ATCCTGCTGC TGGGGTTGAA TGCCCTCAAG AGCATGCAGG TGCGGGAATA TCCCGAGATG
ACCAATACCG TGGTCAACGT GGCCACCAGC TATTATGGTG CCGACGCCAA CCTCATTCAG
GGCTTTATTA CTCAGCCGCT GGAACAGGCA TTGGCCCAGG CTGACAACGT GGATTTTATG
ACCTCCGAGA GTTTTCTCGG CAAGTCCAAC ATCAACGTAT ATATGAAGCT CAACACCGAT
CCCAACGGCG CCCTGGCTGA TATTCTTGCC AAGGTAAACT CGGTGCGCTC GCAGCTGCCC
AAAGAGTCTG AAGATCCGAC TGTGACCATG TCCACCGGCT CGCAAACATC AGTGCTCTAT
ATCGCCTTTT CCAGCGATAG CATCAACTCC AGTCAGCTTA CTGACTATCT GGAGCGGGTG
GTGAAGCCGC AGCTGTTTAC CATCAATGGG GTGGCTAAAG TTAACCTCTA CGGCGGTATC
CAGTACTCGA TGCGCATATG GCTCGACCCG GCCCGCATGG GCGCGTTTAA CCTGAGCGCA
ACCGAAGTGA TGCAGGTGCT GCAGGCCAAC AACTTCCAGT CGGCTGTGGG TCAGGCCAAT
GGTGTCTACA CCCTGTTTAA CGGCACCGCC GATACCCAGG TGGCCACCAT CGACGAGCTT
AAGCGCCTGG TGATTAAGAG TGGTGACGGT AAGGTGGTGC GCCTCGGTGA TATCGCCGAA
GTGTCTCTGG ACAAGAGCCA TGATGTTTAC CGCGCCCTCG CCGACGGTCA GGAGGCTGTG
GTGATAGGTC TGGATGTGAC GCCCACCGCC AACCCGCTCA CTGTGGCCGC CGATGCACGA
ACATTACTGC CGGAAATCGA GCGCAGCCTG CCGCCATCCA TCAAGGCACG CATCCTCTAT
GATTCATCCC GCGCCATCGA CGAGTCCATC AATGAGGTGA TTAAAACCAT CGGCGAAGCG
GCGATTATTG TGATTGTGGT GATCACCCTG TTTTTGGGCT CGCTGCGCGC CGTGCTTATT
CCGATTGTGA CCATTCCGCT GTCGCTGATT GGCGTGGCCA TTATCATGCA GACCTTCGGG
TTCAGCTTAA ACCTGATGAC CCTGCTCGCC ATGGTGCTCG CCATTGGTCT GGTGGTGGAC
GATGCCATCG TGGTCGTGGA AAACGTCGAC CGTCATATCA AGCTCGGTGA AAGCCCGTTT
CGCGCAGCCA TTATCGGTAC CCGCGAAATT GCGGTACCGG TGATTTCCAT GACCATTACC
CTGGCGGCTG TGTACGCGCC AATCGCGCTG ATGGGTGGCA TAACGGGCTC CCTGTTTAAG
GAGTTTGCCC TGACCCTGGC GGGCGCGGTG TTTATCTCGG GCATTGTGGC ACTGACGCTG
TCGCCCATGA TGTGCTCGAA AATCCTGAAA GAGCACAGTG CGCCGAGCAA GTTTGAGCAT
GCGGTTGAAT CAACCTTGAG TCGCATGACC GACAGTTATT CCCGCATGCT GGCTGCTGTT
ATGCAAAAAC GTGCCGTGGT GGTGGCCTTC GCGATTATCG TGTTTGCCTC GCTGCCGCTG
CTGTTTAAAT TCATCCCCGC TGAGCTGGCC CCCAAGGAAG ACAAAGGTGT GGTGATGATG
ATGGGCACAG CGCCTTCCAC GGCCAACCTC GATTACATCC AGGCCAACAT GACGCTGGTT
ACCAATATGA TTGCGGCCCA GCCTGAGTCG GCAGCTTCTC TTGCCTTTGT GGGCATTCCG
AACGCCAATC AGGCATTTGG TATTGCACCT CTGGTGCCCT GGAGTGAGCG TGACAAGAGC
CAGAAAGAGA TGCAGAAGTT CTTTGCCGGT GAGGTAAAGA GCATTCCCGG CATGGCGGTC
ACCACCTTTG AGATGCCCGA GTTGCCCGGC GCCTCCAACG GCTTGCCCAT TCAGTTTGTG
GTCACAACCG CCAGCAGTTT TGAGAGCCTG TTCCAGATTG GTACTCAGGT GCTGGAGAAG
GTGCAAAAGA GTCCTTATTT CATCTACTCC GAGATGAACC TGAAGTTTGA CTCAGGCAGC
ATGCGCATCC ATATCAAGCG CGATCTGGCG GGCACCTACG GGGTGACCAT GCAGGATATC
GGCATGACGC TGTCGACCAT GATGAGCGAT GGCTATGTCA ACCGCATCAA TCTCGATGGC
CGCTCCTATG AAGTGATCCC ACAGGTGGAA CGTAAACTAC GCGCCAATCC CGAGTCACTG
GCAAACTATT ACGTAAAGGC GGCCGACGGT AATTCCATCC CGCTCTCAAG TCTGGTGGAA
ATCGAGATGG TGGCCCAGCC CCGCTCTTTG CCCCACTTCA ACCAGATGAA CTCACTCACC
ATTGGCGGCG TGGCCACTCC CGGGGTTGCC ATAGGTGATG CCATCGCCTT CCTTAAGGAC
ATTGGCGACA ACCAGTTGCC CAAGGGCTAC AACTACGACT TCCTCGGCGA AGCCCGTCAG
TTTGTGACCG AAGGTTCGGC GCTTTACAGC ACCTTCCTGC TGGCCATTGC CATCATCTTC
CTGGTGCTGG CGAGCCAGTT CGAGAGTCTG AAAGATCCTG TGGTGATCCT GGTATCTGTG
CCGCTTGCTA TCTGTGGCGC CCTGATTGCG CTGGGCTGGA CCCATGTGTT CGGACTCTCG
TCCATGAACA TTTATACCCA GGTGGGTCTC ATTACCCTGG TGGGTCTTAT CACCAAGCAC
GGCATCCTGA TGTGTGAAGT AGCCAAGGAA GAGCAGCTGC ACCGTGGTAT CAGCCGTATC
GAAGCCATCA GCCTGGCAGC CAAAATCCGT TTGCGCCCCA TCCTGATGAC CACAGCGGCC
ATGATTGCTG GCCTTATTCC GCTGCTGTTC GCCTCCGGCG CCGGCGCCGT GGCACGCTTC
AACATAGGTC TGGTGATTGT GGCTGGCCTT GCCATAGGCA CTGTGTTCAC CCTGTTTGTA
CTGCCGGTTA TCTACAGCTT TCTCGGTGAA AAACATAAGC CACTGCCAGA GTTTGTGGAA
GCCAATGCCT GA
|
|---|
| Protein sequence | MRFTDIFIKR PVLAVSISFL ILLLGLNALK SMQVREYPEM TNTVVNVATS YYGADANLIQ
GFITQPLEQA LAQADNVDFM TSESFLGKSN INVYMKLNTD PNGALADILA KVNSVRSQLP
KESEDPTVTM STGSQTSVLY IAFSSDSINS SQLTDYLERV VKPQLFTING VAKVNLYGGI
QYSMRIWLDP ARMGAFNLSA TEVMQVLQAN NFQSAVGQAN GVYTLFNGTA DTQVATIDEL
KRLVIKSGDG KVVRLGDIAE VSLDKSHDVY RALADGQEAV VIGLDVTPTA NPLTVAADAR
TLLPEIERSL PPSIKARILY DSSRAIDESI NEVIKTIGEA AIIVIVVITL FLGSLRAVLI
PIVTIPLSLI GVAIIMQTFG FSLNLMTLLA MVLAIGLVVD DAIVVVENVD RHIKLGESPF
RAAIIGTREI AVPVISMTIT LAAVYAPIAL MGGITGSLFK EFALTLAGAV FISGIVALTL
SPMMCSKILK EHSAPSKFEH AVESTLSRMT DSYSRMLAAV MQKRAVVVAF AIIVFASLPL
LFKFIPAELA PKEDKGVVMM MGTAPSTANL DYIQANMTLV TNMIAAQPES AASLAFVGIP
NANQAFGIAP LVPWSERDKS QKEMQKFFAG EVKSIPGMAV TTFEMPELPG ASNGLPIQFV
VTTASSFESL FQIGTQVLEK VQKSPYFIYS EMNLKFDSGS MRIHIKRDLA GTYGVTMQDI
GMTLSTMMSD GYVNRINLDG RSYEVIPQVE RKLRANPESL ANYYVKAADG NSIPLSSLVE
IEMVAQPRSL PHFNQMNSLT IGGVATPGVA IGDAIAFLKD IGDNQLPKGY NYDFLGEARQ
FVTEGSALYS TFLLAIAIIF LVLASQFESL KDPVVILVSV PLAICGALIA LGWTHVFGLS
SMNIYTQVGL ITLVGLITKH GILMCEVAKE EQLHRGISRI EAISLAAKIR LRPILMTTAA
MIAGLIPLLF ASGAGAVARF NIGLVIVAGL AIGTVFTLFV LPVIYSFLGE KHKPLPEFVE
ANA
|
|---|
| |