Gene Sama_3266 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3266 
Symbol 
ID4605513 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3877655 
End bp3879667 
Gene Length2013 bp 
Protein Length670 aa 
Translation table11 
GC content54% 
IMG OID639782686 
ProductATP-dependent DNA helicase Rep 
Protein accessionYP_929138 
Protein GI119776398 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID[TIGR01074] ATP-dependent DNA helicase Rep 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTGA ATCCCGCGCA AAATGATGCA GTCCATTATG TTTCCGGCCC CTGTCTGGTG 
CTGGCGGGTG CGGGCAGCGG TAAAACGCGG GTGATCATCA ACAAAATTGC CTATCTGGTG
CAGAAGTGCG GCTATCAGGC TCGCAATATT GCCGCCGTGA CCTTCACCAA CAAGGCGGCG
CGGGAGATGA AAGAGCGGGT AGCCCAATCC ATGGGCCGCA AAGAGGCGCG GGGGCTGTGG
ATTTCTACCT TCCACACTCT GGGGCTGGAA ATTCTCAAGC GTGAACACAA GGCTGTAGGG
CTGAAGGCCG GGTTTTCGCT GTTTGATGAT CAGGACACCC TGGCGCTTTT AAAGGAACTG
ACCGAAAAAG AGCTTCAGGA AGACAAGGAT CTGCTCAAGC TGCTGGCGAC CTCAATTTCC
AACTGGAAGG GGGCGCTGGT GATCCCGGAT CATGCTCGCA AGATAGCCAA AGATGAGCGG
GAGCAGTTGT TTGCGCTCCT GTACCAGCGT TATGCCCAGC ACATGAAGGC ATACAATGCC
CTCGATTTTG ATGACCTTAT TCTGCTGCCG ACATTGCTGC TGAGGCATAA CGAAGAAGTG
CGCAGGCGCT GGCAGACCCG TATTCAGTAC CTGCTGGTGG ACGAATATCA AGACACCAAC
GGCAGTCAGT ATGAGCTGGT AAAACTGTTG GTGGGCGAAC GTGCCCGGTT TACTGTGGTG
GGGGACGACG ACCAGTCAAT CTATTCCTGG CGCGGTGCCA AGCCCCAAAA CCTGGTGCTC
CTTGGCAAGG ATTTTCCGAG CCTTAAGCTT ATCAAGCTGG AGCAGAACTA CCGCTCCAGT
CAGCGCATTT TGCGCGCGGC CAACATCCTT ATTGCCAACA ATCCCCATGT CTACGACAAG
TCACTGTTTT CTGAGCTTGC CTACGGCGAG CCGATGCGGG TTATCACGGC GCTGAATGAA
GAGCAGGAAG CTGAGCGGGT GGTGGCTGAA ATTATTCGCC ATCGCTTCGT AGGGAAAACC
AGTTATGGCG ACTACGCCAT TCTCTATCGC GGCAACCATC AATCGCGTCT GATAGAGAGA
GCGCTGATGA CCAACCGCAT TCCCTACAAA CTCAGTGGTG GCACGTCCTT TTTTGCCCGT
TCTGAAATCA AGGACATCAT GGCCTATCTG CGGCTGGTGG TGAATCCAGA TGATGACAAT
GCGTTTTTAC GGATAGTCAA CCTGCCCAAA CGCGGCATCG GCCCGGCAAC TCTGGAGCGC
TTGGGTAACT TTGCCAACAG CAAACATATT TCCATGTTTG CGGCTATTTT TGAGCCTGAG
CTGGAGCTCC ATCTGGGTAA CAGTGCCCTG TCGGCGCTGG AGCAATTTGG CCGCTTTATC
GTTGAAACCG GAGACATTGC TGAGCGCGGT GAAGGCGTGG ATGCGATCAA GCAGCTCATC
CGCAACATCA ATTACGAGGA CTTCCTCTAC GAGACCAGCC CCAGCGCCAA AGCGGCAGAA
ATGCGGATGA AGAATATCTC CGAGCTGTAT CGCTGGGTCA CTGAGATGCT CAATGGGGAC
GATCTGGACG AGCCAATGAC GCTGCCGGAG GTGGTGGGCC GTTTGACCCT CAGAGACATG
ATGGAGCGTA ACAGCGAAGA CGAAGCCGGC GATCAGGTAC AGTTGATGAC CCTCCATGCC
TCTAAAGGAT TGGAGTTTCC CTACGTGTTT ATGATTGGCA TGGAAGAGCG TATTCTGCCG
CACCAGACCA GCATAGATGA AGACAACGTG GAAGAGGAAC GGCGGCTTGC CTATGTGGGG
GTGACCCGTG CGCAGCGGGA GCTTTGGTTT ACCCTGTGCC GTGAGCGGCG TCAGTTCGGC
GAAACCATGC GCTGCGAGCC CAGCCGTTTT CTGGACGAGC TACCCCAGGA TGACTTGATT
TGGGAGAGTC GCAAGCAGCC CCAAACAGAG CAACAACGGC AGGAAACGGG CAAAGCCAAT
ATCGCCAATA TCAGGGCCAT GTTTAAAAAA TAA
 
Protein sequence
MKLNPAQNDA VHYVSGPCLV LAGAGSGKTR VIINKIAYLV QKCGYQARNI AAVTFTNKAA 
REMKERVAQS MGRKEARGLW ISTFHTLGLE ILKREHKAVG LKAGFSLFDD QDTLALLKEL
TEKELQEDKD LLKLLATSIS NWKGALVIPD HARKIAKDER EQLFALLYQR YAQHMKAYNA
LDFDDLILLP TLLLRHNEEV RRRWQTRIQY LLVDEYQDTN GSQYELVKLL VGERARFTVV
GDDDQSIYSW RGAKPQNLVL LGKDFPSLKL IKLEQNYRSS QRILRAANIL IANNPHVYDK
SLFSELAYGE PMRVITALNE EQEAERVVAE IIRHRFVGKT SYGDYAILYR GNHQSRLIER
ALMTNRIPYK LSGGTSFFAR SEIKDIMAYL RLVVNPDDDN AFLRIVNLPK RGIGPATLER
LGNFANSKHI SMFAAIFEPE LELHLGNSAL SALEQFGRFI VETGDIAERG EGVDAIKQLI
RNINYEDFLY ETSPSAKAAE MRMKNISELY RWVTEMLNGD DLDEPMTLPE VVGRLTLRDM
MERNSEDEAG DQVQLMTLHA SKGLEFPYVF MIGMEERILP HQTSIDEDNV EEERRLAYVG
VTRAQRELWF TLCRERRQFG ETMRCEPSRF LDELPQDDLI WESRKQPQTE QQRQETGKAN
IANIRAMFKK