| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3260 |
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| Symbol | |
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| ID | 4605507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3868126 |
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| End bp | 3869508 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639782676 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_929132 |
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| Protein GI | 119776392 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.500771 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAG CACTGACAGC AAGGGATCTT GAGATGGTCG ATGACGTATA TGGCGCCATG
ATGACCGATG CACCTACCAG CCACAGACTC ACTATCTGGG CACTCACATC GTTGATATTT
GCCTTCCTTA TCTGGGCGTA TTTTGCTGAG CTGGATCAGG TTACCGTGGG TACAGGCAAG
GTTATCCCCT CGTCGCAAAT TCAGGTTATT CAAAGTCTGG ACGGCGGTGT ACTGCAAGAA
CTGTTCGTGC GCGAAGGCAA TATAGTCGCC AAGGGAGAAC CTTTGGCACG TATTGATGAC
ACCCGCTTCC GCTCAGACTT TGCCCAACAG GAAGAAGAGG TGTTCAGCTT ACAGGCAAAT
GTGATCCGTA TGCGGACTGA GCTGAACAGT ATTACTGTGT CAGATATGGC ATCAGACTGG
CGAGAGCAGG TTCGAATCGT CAAACAGGAA CTGATATTCC CCGACGCTCT TAGCGCACAA
AAAGCTGAAT TGGTCGCGCG TCAACAAGCC GAGTATAACG GTCGACTCGA CAATCTGGAA
AACCAACTGG AGATTCTGGC CAGGCAAATT CAGCAGCGTC AGCAAGAAAA TGAAGAGCTG
ACTACCAAGA TAGCGACCAT GACCACCAGT TTTCAGCTCA TCAGCCGAGA ACTGGAACTT
ACCCGTCCCC TGGCGCAAAA AGGCATTGTG CCTGAGGTTG AATTACTGAA GCTTGAACGC
ACCGTGAACG AACTCCAGGG TGAGCTCAAA GCCATGCGTC AGCTCAGACC TAAAATTAAA
GCCACGCTGG ATGAAGCCAT ATTAAAACGC CGTGAAGCCG TGTTTGTATT CGCCGCTGAT
ACCCGTGCCC AGCTAAACGA CATGCAAACC CGTTTGTCGC GTATGAGTGA GGCGCAGGTA
GGGGCACAGG ATAAGGTGAG TAAAGCCGTC ATTACTTCCC CCGTGAATGG CACAGTGAAA
ACCGTCCACA TCAACACACT CGGCGGCGTG GTGCAGCCCG GGGTAGATAT TATGGAAATT
GTGCCATCGG AAGACCAACT GCTTATCGAG GCCAAGATCA CCCCCAAAGA CATTGCGTTT
TTACATGTTG GCTTGCCTGC CGTAGTTAAG GTAACGGCCT ATGATTTTAC CCGCTACGGC
GGGTTACAAG GCACTGTTGA GCACATCAGT GCCGATACCA CCCAGGACGA AGAAGGTAAC
AGCTTTTATC TGATACGCGT CAGGACCGCA GAGTCCAGCT TGGTTAAAGA CGATGGCACG
GAGATGCCAA TTATCCCCGG GATGCTGACC TCTGTGGATG TCATCACCGG ACAAAGATCT
ATTCTTGAAT ACATACTTAA TCCAATTCTA AGAGCCAAAG ACACCGCACT TAGGGAACGA
TGA
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| Protein sequence | MSKALTARDL EMVDDVYGAM MTDAPTSHRL TIWALTSLIF AFLIWAYFAE LDQVTVGTGK
VIPSSQIQVI QSLDGGVLQE LFVREGNIVA KGEPLARIDD TRFRSDFAQQ EEEVFSLQAN
VIRMRTELNS ITVSDMASDW REQVRIVKQE LIFPDALSAQ KAELVARQQA EYNGRLDNLE
NQLEILARQI QQRQQENEEL TTKIATMTTS FQLISRELEL TRPLAQKGIV PEVELLKLER
TVNELQGELK AMRQLRPKIK ATLDEAILKR REAVFVFAAD TRAQLNDMQT RLSRMSEAQV
GAQDKVSKAV ITSPVNGTVK TVHINTLGGV VQPGVDIMEI VPSEDQLLIE AKITPKDIAF
LHVGLPAVVK VTAYDFTRYG GLQGTVEHIS ADTTQDEEGN SFYLIRVRTA ESSLVKDDGT
EMPIIPGMLT SVDVITGQRS ILEYILNPIL RAKDTALRER
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