| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3259 |
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| Symbol | |
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| ID | 4605506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3865958 |
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| End bp | 3868129 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639782675 |
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| Product | toxin secretion ATP-binding protein |
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| Protein accession | YP_929131 |
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| Protein GI | 119776391 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.349022 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTTTAT CTGCTTCCGG AAGCGATGAG CAATGGACTA TCGCAGCTTC CACGCGGGTC
ACTGTCGATC CCCTGTTGGA TAGCCTGGTG CTCCTCACTG AATATTTTGG CTCCCCCTGC
TCCAGTGAAT CATTGGCGGC GGGACTTCCC TTATCTGGAG CCATACTGAC GCCTGATTTG
GTCCCTCAGG CTGCGGCCAG AGCCGGTCTT AACGCCCGCT TGACCCGTAA AGGTCTGGAC
CAGATTTCCC CAATAATGAT GCCCTGCATC CTGTTGTTAA AAGATAAGAA AGCTTGTCTT
CTCAGAGAAT TGACCTCTGA AAAAGCTGTC ATTCAGTTGC CTGAAACCGG CGGAGAGGAG
ACCCTCCCCG TTGAGCAGCT CGAAACTCTC TATGTTGGTT ATCTGTTTCT GGTAAAACAG
CAATATCGGG GTGATATGCG CTTTGACGTG CATCATCACG ATAATAAAAG CCACTGGTTA
CTGAAAACCT TAAAAGATGC GGCGCCAATA TACCGGGATG CGCTTATCGC CTCCGTGTTG
GTGAACCTCT TTGCCTTGGT TTCTCCTCTC TTTATCATGA ATGTGTACGA TAAAGTGGTG
CCCAACCTGG CATTCGAGTC TCTGTGGGTA CTGGCCATCG GTGCAGGCAT CGCTTACATC
TTTGACTTGG TGATGCGCCA GCTTAGAAGC TACTTGATTG ATGTAGCAGG TAAAAAAGTC
GACATCATAG TGTCATCACA ACTGTTTGCC AAAGCTGTTG GTATTCCACT GTCAAAACGC
TCCCCCAGCG TTGGCGGAAT GGCCAAACAG CTCGGCGAAT TTGACAGCAT TAGGGACATT
CTGACATCCG CTACCATTAC CACCCTGGTG GATTTGCCCT TTGCCGTCTT TTTCCTGATC
ATCATATTTA TTGTGGCTGG CGATCTGGCT GTGCTGCCAT TGCTCGGCGG CGCCATCATT
ATTGGCTACA CCTTGTATAT TCAACCAAAG CTTAAAGCTG CCATTGATGA GAGTAATAAA
TTTGCCAGCC TGAAGCATGG CCACCTGATT GAAAGTCTGG CAGCACTGGA GTCCATCAAA
GCCTATGGCG CCGAGGGGCT GGTGCAAAAA AGCTGGCAAC AGATGATTGG TCATACGGCC
AATTGGCAGC TCAAAGCCAA GAAGCTGTCC AACTCGGTAT CAAACGTCGC CAGCTTTATG
GTGCAGCTAA CCGTGGTGGG CGTGGTCATC CTGGGGGTAT ATAGGGTCGC CGACAATGCC
ATTTCCATGG GTGGCATTAT CGCTGCCGTG ATGCTTTCCA GCCGCGCCAT GTCCCCGATG
GCGCAGTTGG CGAGTTTGTT AACCCGGGCC AACCACACTG CCAGCGCCTT AAGACAGCTT
GACCAGATCA TGACGCAGGA AGATGAGTTT GAGAATAAAG GGCATTTGGT CAGTAAAACC
CGTCTAATGG GTAAAATCGA AGCCGACCAT GTGAGCTTTT GCTATCCGGG TTCCGAAAAA
CCCGTCTTAC ATCCAACGTC TTTGTCTATT CAGCCGGGCG AAAAGGTGGC CATCATTGGC
CGAAATGGCT CAGGGAAAAG TACGTTGGCC AAACTCCTGT GTGGCCTGTA TAAACCCACC
AAAGGTAGCC TCAGATACGA TGGCATTGAC AGCGCCCAGA TCCATCCCAG CGACCTGCGC
AGAAACTTCG GTTACCTGCC TCAGGATGTG GTGTTGTTCC ATGGTTCTAT CAGAGACAAC
ATACTCTTCG GTACCCGCCA GGTATCTGAA CATCAGCTGA TCCGCGCAGT GCAAATCTCT
GGCGTCAGCC TCTTTACCAA TCTCGAATCC GAAGGTCTGG ATCAACAGGT CGGCGAAGGC
GGACAAGCCT TGTCTCGGGG GCAACGCCAA ACTGTCGCCC TGGCCAGGGC CACCCTGAAT
GACCCACCAA TTTTGCTGAT GGACGAACCC ACTGCCAGCC TGGATGCCAG AGCGGAAAAA
CAATTTATCA GAGCTATGGA GCATGTCAGT AAAGACAGGA CTCTCGTTAT CATCACCCAC
AAGATGCACC TGCTGAAATT GGTCGACCGG GTGATCGTAT TAGACAGAGG TCATGTACTG
GCCGATGGAC CCAAAAACGA CGTTCTTGAA AAACTGAGTC TGGGGCTGCT TGCTGGAGGT
GCAAAGGGAT GA
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| Protein sequence | MSLSASGSDE QWTIAASTRV TVDPLLDSLV LLTEYFGSPC SSESLAAGLP LSGAILTPDL
VPQAAARAGL NARLTRKGLD QISPIMMPCI LLLKDKKACL LRELTSEKAV IQLPETGGEE
TLPVEQLETL YVGYLFLVKQ QYRGDMRFDV HHHDNKSHWL LKTLKDAAPI YRDALIASVL
VNLFALVSPL FIMNVYDKVV PNLAFESLWV LAIGAGIAYI FDLVMRQLRS YLIDVAGKKV
DIIVSSQLFA KAVGIPLSKR SPSVGGMAKQ LGEFDSIRDI LTSATITTLV DLPFAVFFLI
IIFIVAGDLA VLPLLGGAII IGYTLYIQPK LKAAIDESNK FASLKHGHLI ESLAALESIK
AYGAEGLVQK SWQQMIGHTA NWQLKAKKLS NSVSNVASFM VQLTVVGVVI LGVYRVADNA
ISMGGIIAAV MLSSRAMSPM AQLASLLTRA NHTASALRQL DQIMTQEDEF ENKGHLVSKT
RLMGKIEADH VSFCYPGSEK PVLHPTSLSI QPGEKVAIIG RNGSGKSTLA KLLCGLYKPT
KGSLRYDGID SAQIHPSDLR RNFGYLPQDV VLFHGSIRDN ILFGTRQVSE HQLIRAVQIS
GVSLFTNLES EGLDQQVGEG GQALSRGQRQ TVALARATLN DPPILLMDEP TASLDARAEK
QFIRAMEHVS KDRTLVIITH KMHLLKLVDR VIVLDRGHVL ADGPKNDVLE KLSLGLLAGG
AKG
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