| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3250 |
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| Symbol | |
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| ID | 4605497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3844347 |
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| End bp | 3845591 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639782666 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_929122 |
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| Protein GI | 119776382 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.773654 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGATCATT TTCTCTATCG TGAAGAGCGG CTGTTTGCCG AAGAGTGCGA TGTGGCAGGT
CTCGCAGCCG AACATGGCAC GCCCCTGTAC GTTTATTCCC GTGCCACCCT CGAACGCCAC
TGGCACGCCT TCGATGGTGC TGTAGCGAGC CATCCACACC TGATTTGCTA TGCGGTAAAA
GCTAACTCCA ACCTGGCGGT GCTCAATGTG CTGGCCCGGC TTGGCAGTGG TTTCGACATC
GTCTCCGGTG GTGAACTTAG CCGCGTGCTC GAAGCCGGCG GTGACCCAGC CAAAGTCGTA
TTTTCCGGGG TGGGCAAAAC CGTGGCCGAG ATGGAGCTGG CGCTCAATAC CGGCATTATG
TGCTTTAACC TGGAATCCGG CGCCGAGCTT GAGCTCCTGA ATGAAGTGGC TGGTCGTCTT
GGCAAGGTGG CGCCAGTGTC GCTGCGTGTT AACCCCGATG TGGACGCAGG TACCCATCCT
TATATTTCTA CCGGCCTGAA AGAAAACAAA TTCGGTATTC CCATGGAGGA GGCGGAGGCC
CTGTTTGCCC GCGCCGCCGC GTTGCCGAAT CTGGCAGTGA AGGGGGTGGA TTGTCACATT
GGTTCGCAGC TGACCGAACT CAAGCCCTTC CTCGATGCCA TGGACCGCAT GCTGGCGTTG
ATTGACCGTC TGGCAGAGCA GGGCATTGTG ATTGAACACT TCGATGTAGG TGGCGGCCTT
GGTGTGACCT ACAACGGTGA AACCCCGCCG CATCCGGATG TGTATGCCGC TGCGATTCTT
GAGAAGCTCA ATGGCCGCCC GCTTAAGCTG ATTTTCGAGC CCGGCCGTGC CATTGCCGCC
AACGCCGGTA TCTTTGTTAC TCAGGTGCTT TACACCAAGG ATAATGGCGA CAAACGCTTT
GTGATTGTCG ATGGCGCCAT GAATGACCTT ATCCGCCCGT CGCTTTACGG CGCCTGGCAA
AACATCATTC CTGCAGTCAA AACCAATGAG CCGACTACCC GCTGTGACGT GGTTGGCCCT
GTGTGTGAGA CCGGTGATTT CCTCGGTAAA GACCGTGAGT TGGCGGCGGG CAGTGGCGAT
CTTCTGGTGG TACGCAGCGC CGGTGCCTAC GGTTTTACCA TGGCGTCGAA CTACAATACC
CGCCCCCGCG CCGCTGAGCT GATGGTCGAT GGCGACAAGG CGTATGTGGT GCGCGAGCGG
GAAAAACTCA GTCAGCTCTG GCAAGGAGAG CAACTCCTGC CGTAA
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| Protein sequence | MDHFLYREER LFAEECDVAG LAAEHGTPLY VYSRATLERH WHAFDGAVAS HPHLICYAVK
ANSNLAVLNV LARLGSGFDI VSGGELSRVL EAGGDPAKVV FSGVGKTVAE MELALNTGIM
CFNLESGAEL ELLNEVAGRL GKVAPVSLRV NPDVDAGTHP YISTGLKENK FGIPMEEAEA
LFARAAALPN LAVKGVDCHI GSQLTELKPF LDAMDRMLAL IDRLAEQGIV IEHFDVGGGL
GVTYNGETPP HPDVYAAAIL EKLNGRPLKL IFEPGRAIAA NAGIFVTQVL YTKDNGDKRF
VIVDGAMNDL IRPSLYGAWQ NIIPAVKTNE PTTRCDVVGP VCETGDFLGK DRELAAGSGD
LLVVRSAGAY GFTMASNYNT RPRAAELMVD GDKAYVVRER EKLSQLWQGE QLLP
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