| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3238 |
|---|
| Symbol | |
|---|
| ID | 4605485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3831225 |
|---|
| End bp | 3832166 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639782654 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_929110 |
|---|
| Protein GI | 119776370 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1801] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.942777 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTCC CCGAGACCCC AACAATCCGC ATCGGTATGG CCATGTGGTC CCATCCCGGT
TGGAAAACCG TGTTTCCCGG TTTGGATGCC GAAGCGCGGC TGACCGCTTA CAGCCGGGTA
TTTGGCACAG TGGAAGGCAA CACCAGCTTT TATGCCCTGC CATCGGCGCA GCAGGTAAGC
ATTTGGCAAA GGGCGACACC GGAAGACTTT CGTTTTACTT TCAAACTGCC AAGACGCATT
ACCCACGAGC TTTCACTGCG TAATTGCCGC GAGGAAGTAC TGCAGTTTTT TCGGTTGTTT
GAGCCTTTGA TGGCCAAAAC CGGGGTGTGG AAAATCCAGT TGCCGGCCCG TTTCGGCCCT
GAATCTTTAT CTGTGCTGAC ACAGTTTCTG TCATTGTTGC CCGAGGGGAT TGGTCTTGGC
GTTGAGGTAC GCCACAGGGC GTTTTTCGCC AAGGGAGAGG CCGAGAAAGA CTTCAATCGC
CTGTTGATGG ACAAGGGCAT CAATCGCATC ATCATGGATA CACGGCCCGT GTTTGCCCTG
CCAGCCATCA ACGAGGCGAT AACCGATGCC CACCAGAAAA AACCACGGGT GCCTGTGCAT
CCTCTTGCCA CGGGGGCCCA TCCGGTGGTG CGTTTTATCG CCCAGCCCCA TACGCCTGCA
GCTTGGGGGC CGGGGGGCAA ACCCGCCGAC CTTGGCTGCG CCGATAATCT GGCGTTTTTC
GCCCCCTGGC TTGGCAAACT GGCCGGTTGG CTGGCCGAAG GTCGCTCTCC TTATCTCTTT
ATTCATACCC CGGACAACAG CGATGCCCCA CTGCTTGCAA GCGAGCTGGC GAAGCAGGTT
GCCGCACATC TGCAGGCATT GCACCCCGGA CTGCCTATAC CTTCGGTGAT GCTCGATAGC
GCCGAATCTG ACGGTGGTCA AATTGGCCTT GGGCTCCAGT AA
|
|---|
| Protein sequence | MSLPETPTIR IGMAMWSHPG WKTVFPGLDA EARLTAYSRV FGTVEGNTSF YALPSAQQVS
IWQRATPEDF RFTFKLPRRI THELSLRNCR EEVLQFFRLF EPLMAKTGVW KIQLPARFGP
ESLSVLTQFL SLLPEGIGLG VEVRHRAFFA KGEAEKDFNR LLMDKGINRI IMDTRPVFAL
PAINEAITDA HQKKPRVPVH PLATGAHPVV RFIAQPHTPA AWGPGGKPAD LGCADNLAFF
APWLGKLAGW LAEGRSPYLF IHTPDNSDAP LLASELAKQV AAHLQALHPG LPIPSVMLDS
AESDGGQIGL GLQ
|
|---|
| |