| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3233 |
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| Symbol | |
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| ID | 4605480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3825771 |
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| End bp | 3827876 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639782649 |
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| Product | TonB-dependent receptor, putative |
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| Protein accession | YP_929105 |
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| Protein GI | 119776365 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.88155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.66393 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAATG CTTTGTTTCT TAAAAATAAA CTCTTTATTG CTCTGTCAGT CACCTTAGGC
GCTTTCCCCG GTATTTCCCT GGCGATGCAG GCCCCCTTAT CCGATATCGA ACACCTCGAG
GTCGCAGGCC AAAGGCCCGG TGACCATCAG CAGCTTGGCA GCGCCGAGCG TCTCCTCGGT
AAGCAGGGGG TGGACTTTTC TGCCGCTGGC GGCATGGCCG CGCTGCCGGT ACTGAATGGC
ATGATGGGCG ATCGCATCAA GATACTGGTG GATGGCGCTG ACGTATCTGC GGCCTGCGCC
AACCAGATGA ACCCGCCCCT GTCGTACGTG TCTGCCAGTC AAATCCGCAG CGTCAGCGTG
GTGGCAGGCG TCTCGCCGGT GAGCCTGGGG GGCGACAATA TTGCCGGTGT GATTAAGGTC
AGCAGCCTGG TGCCCCGCTT CGGCCAGTCT GACTCAGTGC AATGGGAACA GGGTTCTCTG
TCTGCCGGAT GGCGCAGTAT CAGCCACAGC CAGACCTATA GTGCCAGCGC CTCGGCGAGC
AGCAAAGACT TGAGCTTTGA GTACCGCGGC GCCTTTGAAG ATGCCGAAAG TTACCGGGAC
GGCCATGGCA ACAGAGTCAC AGATACCCTG TTCCGCGCCC AAAACCACAG CTGGCTCGCG
GCTTGGCAGG ACGAGGGCCA AACCCTGGCG CTCAAGCTGA CCCATCAGTA CATCCCCTTT
GAAGGTTTTG CCAACCAATA CATGGATATG ACTGATAACA AGGGCTATGG GGCACAGCTT
AATTATGACC GCAAGCTGGC CAGCGAGGGC GAGTTCAGTG CCCAGCTCAA CTGGCATCTG
GTACAGCACA AGATGGGCTT TTTCAGCGAT GAGAAGCCGG GCAAGATGCC CATGGAAACC
GAAGGCAGCG ACTACAGCTA TCAACTGGCC TGGCGCCTGC CTGAGAGTGA CGGCGATGTT
TGGCTCTGGG GCCATGAGTT TTTTAACCAG CGCCTCGACG ACACCTGGCC TGCGGTGCCC
GGCTCCATGA TGATGGGTCC CATGGATTAT GTGAACATTC AGGATGGGCT GCGCCGCCGT
GTTGCCCTCT ATGGCGAGTG GCAACATAAC TTCAGCCCCC GTTGGTGGTT ATCATCCGGC
GTACGATTTG AATATGTGAC CACCAACACG GGTGAGGTGC AGCCCTATAG CCGCATGCCT
GTAATGGGCA TGCCTAATCC CGATGCCGCA GCGGCATCCA CCTTTAACAG CAGCTACCGC
AAGCAGTCGG ATGCGCTGCT TGATGCCACT GTGCTGGCCC GTTATCAGGG GGGAGACAAC
TGGCAACTTG AGCTGGGGCT TGCCCGGAAA AATCGTGCCC CTAACCTGTA CGAGCGCTAC
AGCTGGGGCC GGGGCGTAAT GGCCAGCACC ATGGTGGGCT GGTTTGGTGA TGGCAATGGC
TATGTGGGCG ACATCAATCT GCGCCCGGAA ACCGCCCATA CCCTGAGCCT GGCCTACAGC
TATGCCGGGG AGGATATGCA ACTGGGCGCC GCCGCTTGGT ACAGCGACAT TCGGGACTAT
ATCGATGTGG AGGTAATTGG CAGCTTCAGC CGTGGCGGCA CCGATGGCAG CCGTAATCTG
CTGCAGTTCA CCAATCTGGA TGCCAGGCTG TATGGGGCAA ATCTGTACGT CAACTATCGG
CTTAGCGAAG GCCAGAGCGG CCGCTGGAGC GTCGAGGCCG AAGCCACCGC CCTGAGGGGC
GAGCGCAAAG ACGGCAGTGA GCCTTTGTAC CAAATCAAGC CCCTTGAAAC CCGCCTGGCG
CTGGCCCATC GTCTGGGTGA CTGGCAAACA GCGCTCGAAT GGCAATGGGT TGCCACCAAG
GATGAGGTAG ACAGCCGCCG CCTGGAAAAT ACCACCGACA GCTATTCACT GCTGAACCTG
GAAAGTCGCA TCACCTGGCA ATCACTGACC CTGACTCTGG CGCTGAATAA CCTGCTTGGA
CACTACTATC AGCTGCCTTT GGGTGGTGTC AGCGTGGCCG ACTACCGCAA CAACAAGGAC
GCGGGATTTG CCCCGTTGGC GGGGGCTGGT CGCTCACTGG AGTTGTCTGC AAGCTATCGT
TTCTGA
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| Protein sequence | MHNALFLKNK LFIALSVTLG AFPGISLAMQ APLSDIEHLE VAGQRPGDHQ QLGSAERLLG
KQGVDFSAAG GMAALPVLNG MMGDRIKILV DGADVSAACA NQMNPPLSYV SASQIRSVSV
VAGVSPVSLG GDNIAGVIKV SSLVPRFGQS DSVQWEQGSL SAGWRSISHS QTYSASASAS
SKDLSFEYRG AFEDAESYRD GHGNRVTDTL FRAQNHSWLA AWQDEGQTLA LKLTHQYIPF
EGFANQYMDM TDNKGYGAQL NYDRKLASEG EFSAQLNWHL VQHKMGFFSD EKPGKMPMET
EGSDYSYQLA WRLPESDGDV WLWGHEFFNQ RLDDTWPAVP GSMMMGPMDY VNIQDGLRRR
VALYGEWQHN FSPRWWLSSG VRFEYVTTNT GEVQPYSRMP VMGMPNPDAA AASTFNSSYR
KQSDALLDAT VLARYQGGDN WQLELGLARK NRAPNLYERY SWGRGVMAST MVGWFGDGNG
YVGDINLRPE TAHTLSLAYS YAGEDMQLGA AAWYSDIRDY IDVEVIGSFS RGGTDGSRNL
LQFTNLDARL YGANLYVNYR LSEGQSGRWS VEAEATALRG ERKDGSEPLY QIKPLETRLA
LAHRLGDWQT ALEWQWVATK DEVDSRRLEN TTDSYSLLNL ESRITWQSLT LTLALNNLLG
HYYQLPLGGV SVADYRNNKD AGFAPLAGAG RSLELSASYR F
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