Gene Sama_3216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3216 
Symbol 
ID4605463 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3808397 
End bp3808723 
Gene Length327 bp 
Protein Length108 aa 
Translation table11 
GC content52% 
IMG OID639782632 
Productthioredoxin 
Protein accessionYP_929088 
Protein GI119776348 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3118] Thioredoxin domain-containing protein 
TIGRFAM ID[TIGR01068] thioredoxin 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.604019 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGACA AAATTGTAAC CCTGAGCGAC GACAGCTTTG AAAACGACGT ACTGAAGTCT 
GAACTGCCAG TTCTGGTAGA CTTCTGGGCA GAATGGTGCG GCCCTTGCAA AATGATCGCC
CCAATTCTGG ACGACGTAGC TGCCGAATAC GAAGGTAAGG TTACAGTTGC CAAGCTGAAC
GTTGACCACA ACAACGCCTC TCCCGCCAAG TATGGCGTGC GTGGTATCCC AACGCTGCTG
ATGTTCAAAG GCGGCGAACT GGTTGCTACC AAGGTTGGCG CCTTGTCCAA GACTCAATTG
AAAGAGTTCA TCGACGCTCA GCTCTAA
 
Protein sequence
MSDKIVTLSD DSFENDVLKS ELPVLVDFWA EWCGPCKMIA PILDDVAAEY EGKVTVAKLN 
VDHNNASPAK YGVRGIPTLL MFKGGELVAT KVGALSKTQL KEFIDAQL