| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3210 |
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| Symbol | |
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| ID | 4605457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3799098 |
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| End bp | 3800972 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639782626 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_929082 |
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| Protein GI | 119776342 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTAGAC TCCTGCTGCT GTTACTCGCA CTGGGATATA GTCTGCTGGC GCAGGCCGGC
GCCCCTGCTT TGGTATACAC GCAAGAGTCG GGGGATGTGA TAGAACTGAC CCCCTGGGTA
AGCGCGTTTC AGGCCAGCGA ACTTATTGAT TACCGAGAAC TTCCACCCCA GAATGACCCA
CGCTGGCAAC AACTTCCCAA GCAGGGCACC CATGGCATGG GGGCGCAGAA TCGCTGGCTC
AGGATAGATA TTGATGTCAG AACCCATCCG GGCAGCCGGG TGCTCAGTAT CAATAACCCC
CTGCTGGATA ACTTGCGACT CTATCATCTG GTCAATGGCA ACCTGATGAC TGAACACCAT
TTTGGTGACA GCTTGCCATT TGATGAACGC CTGCTCCTGA GTACTCAGTT CCTTTACCCG
TTGCAGCTGC GGCCATGGGA GCATCACACC CTGCTGCTCC GGGTCGATAC CGAAGGTAGC
AGCCATGTGC CCTTGACTCT GATGACGCCC GGTCATCTGA GCCAGATGCT CGAAAGCCGT
AATCTGGTTC AGGGTTTCCA GCTTGGCATC CTCGCAGCCA TCGGTCTGTT CAGTTTATTC
GTGGCACTGG CCTCAGGCTC CTTCAGCTAC AGCTATTACG CCGCTTATGT GTTGTCCATG
ACACTCTTGG TTGCCTCCTT GCAAGGGGTG GCATTCCGCT ACCTTTGGCC ACAATTACCA
GCCATGCAAG CCTGGGTTAT CCCGTTCCTG CTACCGCTGG TCATGTGTTT TGCGCTCATG
TTTGCCGAAA AGGTATTGCA ACTTAAATAC CTGAATATTC GTATGCTGCG CATTTGTCGC
TTCAGCGCCA CCTTCAGTCT GTTTCTGGCA CTGCTGTCCC CCTTTATCAG CTACAGCCTG
GCGATGTATT GCGACCTGGT CGCCCTGCTG GGTATTGCCG TGGTACTGCT CGCCTTCGCT
CTGGTGCAGG CCCTGCGGGG ACAAAAACTC GCCCGCCTTT ACTTCGTCGG TTGGATAGTC
TTTCTGGCTA GCGTTATTGT CACCAGCCTG ATTTACCTCG GTGCCATCCA AACCACCATG
GAACCCCTCA GCCCGGCCAT GGCGGGGGTC ACCTTTGAAA TTGTGTTCAT GTCGCTGGTA
CTGGCCATTC GTTACAGTGA CGAGCGCAAA GCCAAACAGC GCATACAGCA GGAAGCCCTT
GAGCAGGCCA AGCGTATCCG TGAAGCCCGA GAGGAAGCCC TCAAGGTCGA GGCCGAATCC
AACGAGCGCC TGGAAGAGAT GGTGCAGGAA CGCACCCTTG AGCTGGAAAT TGTCCTGCGT
GAGCTTAATG AGGTGAACCA AAAACTCACC GAACAAACCA CCATCGACAG CCTCACCGGC
GTGAAAAACC GGGCTGCATT CAATAAGCGC TTGCAGGCCG AAGGACGCAT AAGCCGACGT
CAGCAAACCC CCATGGCTCT GCTGATGCTG GACATAGATC ATTTCAAGAA TATCAACGAC
AAATATGGCC ACCTCGCCGG CGACTACACC CTGAAAGCCA TCGCCGATAC GCTGAGTGCA
CAACTCAGGC GCCCAACGGA TCTCGTGTCA CGTTTTGGGG GCGAGGAGTT TGCTATCATA
CTGCCATCCA CCGATGCTGA AGGAGCCGTC GCCGTCGCCG AACATATCCG CGAAGCGGTA
GAAGAGCTCA CCATCAAGTG GGAGCAATTT ATGATCCCGC TGACCGTGAG CATTGGTGTC
AGCAGCAATA TTATTGAGAG TGACGAGCAT CCGCTGCAGC TGCTTGAGCA GGCGGACAAG
GCGCTCTATC AGGCCAAACA CGACGGCCGT AACAGGGTGG GCCTTTTTCA GGACATACCC
GTTCCCCATC CATAG
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| Protein sequence | MGRLLLLLLA LGYSLLAQAG APALVYTQES GDVIELTPWV SAFQASELID YRELPPQNDP
RWQQLPKQGT HGMGAQNRWL RIDIDVRTHP GSRVLSINNP LLDNLRLYHL VNGNLMTEHH
FGDSLPFDER LLLSTQFLYP LQLRPWEHHT LLLRVDTEGS SHVPLTLMTP GHLSQMLESR
NLVQGFQLGI LAAIGLFSLF VALASGSFSY SYYAAYVLSM TLLVASLQGV AFRYLWPQLP
AMQAWVIPFL LPLVMCFALM FAEKVLQLKY LNIRMLRICR FSATFSLFLA LLSPFISYSL
AMYCDLVALL GIAVVLLAFA LVQALRGQKL ARLYFVGWIV FLASVIVTSL IYLGAIQTTM
EPLSPAMAGV TFEIVFMSLV LAIRYSDERK AKQRIQQEAL EQAKRIREAR EEALKVEAES
NERLEEMVQE RTLELEIVLR ELNEVNQKLT EQTTIDSLTG VKNRAAFNKR LQAEGRISRR
QQTPMALLML DIDHFKNIND KYGHLAGDYT LKAIADTLSA QLRRPTDLVS RFGGEEFAII
LPSTDAEGAV AVAEHIREAV EELTIKWEQF MIPLTVSIGV SSNIIESDEH PLQLLEQADK
ALYQAKHDGR NRVGLFQDIP VPHP
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