| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3207 |
|---|
| Symbol | |
|---|
| ID | 4605454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3796895 |
|---|
| End bp | 3797647 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639782623 |
|---|
| Product | Sec-independent periplasmic protein translocation protein TatC |
|---|
| Protein accession | YP_929079 |
|---|
| Protein GI | 119776339 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
|---|
| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCAC ATCAACAACC TCTGATCAGC CACCTGCTTG AGCTGCGCAC CATACTGCTC
AAGTGTATTG CCGGTGTCTT GCTGGTATTT ATCTGTTTGG TCTACTGGGC CAACGATATT
TACCACTATA TGGCCATCCC CCTGATGCAG GCATTGCCAG AAAGCTCCAG CATGATTGCC
ACCGACGTGG CAGCGCCCTT CTTCGCGCCC TTCAAGCTGA CTATGGTGCT GTCATTTTTC
ATCGCCGTGC CCTATGTGCT GTATCAAATC TGGTCTTTTG TGGCACCGGG GCTCTACAAG
CATGAAAAAC GCCTGGTGGT CCCCCTGCTC GTGAGCAGTA CTTTACTGTT TTATATGGGG
ATTGCCTTTG CCTACTTCGT GGTATTCCCC GTGGTATTCG GCTTCTTCAC CAGCGTGGCG
CCCGAAGGGG TGACGGTGGC AACCGACATC AGCAGTTACC TGAATTTTAT TCTGAAACTC
TTTTTTGCCT TTGGCCTGTC CTTTGAGATC CCCATCGCCG TGGTACTGCT GTGCTGGGCA
GGGGTGACCA GTGTCGAAGA CCTCAAGGCC AAACGCCCCT ATATCGTGGT TTCGGCCTTT
ATTATTGGGA TGTTGCTGAC ACCTCCGGAC GTGATTTCAC AAACCATGTT GGCTGTTCCC
ATGCTGTTGC TGTTTGAAGG CGGATTGCTT GCTGCCCGCT TTTACAGTAA AAAGAGCGAA
GACGAACAAG AAGAACAAAC ACACGCCGAC TGA
|
|---|
| Protein sequence | MSSHQQPLIS HLLELRTILL KCIAGVLLVF ICLVYWANDI YHYMAIPLMQ ALPESSSMIA
TDVAAPFFAP FKLTMVLSFF IAVPYVLYQI WSFVAPGLYK HEKRLVVPLL VSSTLLFYMG
IAFAYFVVFP VVFGFFTSVA PEGVTVATDI SSYLNFILKL FFAFGLSFEI PIAVVLLCWA
GVTSVEDLKA KRPYIVVSAF IIGMLLTPPD VISQTMLAVP MLLLFEGGLL AARFYSKKSE
DEQEEQTHAD
|
|---|
| |