| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3182 |
|---|
| Symbol | |
|---|
| ID | 4605429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3773155 |
|---|
| End bp | 3774984 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639782598 |
|---|
| Product | sensor histidine kinase |
|---|
| Protein accession | YP_929054 |
|---|
| Protein GI | 119776314 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAT TGCTGCTGTG TGTGTTATTG TGGCCCCTGT CGGTGTTGGC TACCGATGCC
GAAATGGGGG ATGAGCCCAT TGAAGCCGTG TTCAGAGTCG GGGTACTTGC CAATCATGGG
GTTGGTGAGG CGAAACAGCG CTGGCAACCC ATGATGAACT ATTTGTCGGA CAGGGTGCCC
GGCATTCGTT TTGAAGTCGA GCCGCTGGAT TTTGATGCCA TGCGCGAGCA GCTGTTGGAC
TTGCGTATCC AATTTATTGT GACCAATCCG GGCCAATATC TGAGCCTGTC CAACGAGATG
CCTCTCTCTT GGCTTGCCAC CATGCGCAGC CGCAAACACA ACGGTGCCAC CTATGCCATA
GGCTCCACCA TCATAGTGCG CAGCGACAGC CCTGTGCAGC ATATCGAAGA GCTCGAAGGG
GCCCGAATCG TGGCCTCCGA TCCTCAGGCG CTCGGTGGCT ATCAGGCCAC CATTGGCCTG
TTGAATCGCC GCGGTTTGGA TGCGCGCAAC TTTTTTGCCG ATGTGCGTTT TCTGGGGTTT
CCATTGGAGC CGCTGGTGTA TCAGGTGCGC GACGGCATGG TCGATGGCGC TATTACGCCT
TACTGCACTC TGGAAGAAAT GGTGGACTCG GGCCTGGTGC GCCGGGAGGA TTTTCGGGTG
CTTAACAGCA TGCGTCCGGA AGGCTATGAC TGTGAAATCA GCACCAGTTT GTACCCCAAT
TGGTCCTTTG CCGCCTCCGA TAAGGTACCC GCCCGCATCA CCCAGATGGT CACCAAGGCG
CTGTTTGAAC TGCCCTCAGA CTCAGAAGCC GCCATTCGGG CCCGCACCCT GGGCTGGACC
GCCCCCATCA GCCAACTCAC GGTTATTCGC CTCTATGAAG AGCTTCTGCT CCATGGCAAC
AGCACCCGAC CACTGGAGCT GGTGCGAGCC TGGCTTAAGG CCAATCTGGA ATACGCCATC
AGTTTGGTGC TTATTCTGTT TGCCGGCATG GTTTACCACC TGTGGCTCGA ATATAAGTTT
CGCCAAAAGA GCGACAGCCT GATAGCGGCC GAGCGCACCT TAAGGGACAG GGAACTCATG
TTGGAGCGGA TGCAAAGCGC CGCTATTTTG GGGGAGATAG GCGCCGGGCT TGCCCATGAA
CTCAACCAGC CTATTGCCGC CATTACCCAA TACAGCGAGG GTGGATTGAT GGCGCTGAAG
CAGCAAGATC ACGCCAGTGC CGAACTGCGT TTGCAGGCAG TGGAGGAGGT GCTTGGCAAA
ATTAATCGCC AGTCGATGCG TGCCGGTGCC GTGGTGCATC GTATCCGCAG CCTGCTGCGC
CGCCGTCGTG CCCGCCCGGA AGCCGTGCTG ATGAGTTCCT TGCTGAGTGA AGCCCTGGCC
TTGTTTCAAC GCTCCCTGGA GCAGCAGCGG GTGCAAGTGA CACTGAAACA AGCGGGCGAA
GAGCGACCGC TGTTGGGGGA CGCGGTGGGG TTGAGTCAGC TGCTGGTGAA TCTGCTCAAA
AATGCCCTTG ATGCCATGGA GGTCCGGTCT GAGGCTAGGC AAATTGATAT CACGCTGGAC
TTTGATGCCA GCAAGCCCGG CAGTGCAGCC AGGGTGCGCT GGCTGAGGCT GGAACTCCTG
GACAATGGCA GCGGCCTTAA GGCCGAGGCG GCGGAGCTGA TGCTCTCTTT TGCCACCACC
AAAGACGAAG GTTTGGGCCT GGGGCTTGCC ATCTGTCGTG ATGTGGTCAA TCAACATGGA
GGTGATATTC AGCTGCAAAA CCGCCAGGAC GGCAGCGGTT GCCGGGTCAC TGTGTGGTTA
CCATTGCTGG CGGACGATGA GTCTGTATAA
|
|---|
| Protein sequence | MKSLLLCVLL WPLSVLATDA EMGDEPIEAV FRVGVLANHG VGEAKQRWQP MMNYLSDRVP
GIRFEVEPLD FDAMREQLLD LRIQFIVTNP GQYLSLSNEM PLSWLATMRS RKHNGATYAI
GSTIIVRSDS PVQHIEELEG ARIVASDPQA LGGYQATIGL LNRRGLDARN FFADVRFLGF
PLEPLVYQVR DGMVDGAITP YCTLEEMVDS GLVRREDFRV LNSMRPEGYD CEISTSLYPN
WSFAASDKVP ARITQMVTKA LFELPSDSEA AIRARTLGWT APISQLTVIR LYEELLLHGN
STRPLELVRA WLKANLEYAI SLVLILFAGM VYHLWLEYKF RQKSDSLIAA ERTLRDRELM
LERMQSAAIL GEIGAGLAHE LNQPIAAITQ YSEGGLMALK QQDHASAELR LQAVEEVLGK
INRQSMRAGA VVHRIRSLLR RRRARPEAVL MSSLLSEALA LFQRSLEQQR VQVTLKQAGE
ERPLLGDAVG LSQLLVNLLK NALDAMEVRS EARQIDITLD FDASKPGSAA RVRWLRLELL
DNGSGLKAEA AELMLSFATT KDEGLGLGLA ICRDVVNQHG GDIQLQNRQD GSGCRVTVWL
PLLADDESV
|
|---|
| |