| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3179 |
|---|
| Symbol | |
|---|
| ID | 4605426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3768411 |
|---|
| End bp | 3770216 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639782595 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_929051 |
|---|
| Protein GI | 119776311 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCAAA CCCCAGGGCC TGTTACAACC CAAATTCGAC CGGCGCGACC GGTCAGGAGC
GTGAGTATGC GTACCCTTAT CTCTCTGGCA GTGGCAAGTG CACTGGGATT TACTCCCTTA
CTGTTCACCT CTCAGTCGTT GGCCGCTGAC AACACCGCAA ATAGCGACCA GGCCAAAATC
GAGCGGCTGC AACAAAAAAT CGATGAACTG TCCGAAGAAC TGGCAGACCT CGATACCCGA
GTCAATAAAA CCGAACGCCA CACAGCACTG GACAGAATCA CCTTCAGTGG CGACTTTCGC
ACCAAGGTGC ATTCGCTGCA CTACCGTGAT GTCACCTGGA ACCCCGGCAT CAAGATGAAC
TTTGATGACT TCGGCCGCCG TGCCATGGCC GGTGAATACG GCGATCCCAT GGATCCGACC
TCCCCCCTTG GCAAGATGAT GGCCGCCAAC CCGGATATGG CCGCCGCCTT TATGGGTGGG
CAACTCTCCG GTGTGATGCC CTGGGCCCTT GGCAGCACAA ACACCTACGA TATCGACAAC
GACCTCTTTT ACACCACCCG TCTGCGCCTC GATATCAAAG CCAATGTATG GGAAAACGTG
AACTTTGCCG GGCGTTTGTC CATGTACAAA AACTGGGGCG ACTCTACCGG TGTGCAGGTA
TTCGATTCCT GGCGTTCTTT CTCCATGGAC GGTACCAATT CCGGCAACAC CAGCGGTGAC
TGGCTGCGGG TAGAACGTGC TTATTTCGAC TGGAAAAACA TCGGTGGCAG CGAGTTCTAT
CTGTCTATCG GCCGTCGTCC ATCCACCTAT GGCCCTCCTT CAAATATCCG CGAAAATGAA
CAGCGCGGCG GCACGCCTTC CGGCCATCTG GTGCACTTTA ACTTCGATGG CGCCACCCTG
GGTTATAACC TGGGTGAAAT CACCGGCATC GAAGGCCAGG TCGTACGCTT CTGTTATGGC
CAGGGTTTTG AGTCCCAGTG GGGTAATGGC GAACTGTTTG GCAACCTTGT AACCGAAGAC
ACCCACCTCG GCGGCTTCAA CATCGACGTC ATCAACGATG GTAACCACTT CGTGCAGTTG
ACCCTGTTCG GCGCCAAGGA CATCAACGAT GGCTTCAAGG GCTCCATGGC CTTCCCCAAC
GAACTGGCGG CCATTTTCGC CCCCACCATG TATCAGGACA TGCAAAAGTT CGACAGCTTC
AACTTTGTCA CCCGGGTACA ACCCAGCGGT GTGATTGGTG ACATGTTCCT GGGTGGCTTG
GGCTACGTGT ATGAATCTGA TGAAGATTTT AAAGCCTTTG CGTCACTGGG CTGGACCCGC
GCCGAGTCAA ACGGCAATGC AGGCATGTTT GGCGGCCTGC TCACCGACGC GACCTTTACG
GGCAAACTCA GTGCCGATGG CAGCGAGCTG ATGATGGTGC CGCTGGCCGC CGAGAGTGAT
GCCGCCCACG ACGGCTACGG CGTCTATATC GGCATGCAAA TGCCCGCCCC CTACGGCAAG
TTTGGTCTCG AGTATAACTA CGGCTCCAAA TACTGGAGTC CCTTCACCCA GGCCCAGGAC
GACCCCATCG GCAGCAAGCT CGCCACCCGT GGCCATGTGG TCGAGGCCTA CTACCTGTTC
GAGGTCAATC CCCGGATGTT TATCAAGCTC GCTGGCCTTT ACTACGACTA TGAGTACACC
GGCTCTGGCA CCCCGGTTGG TGCACCAGTG AAGGTGGATG ACGTAATGGC AGGCAGCGCC
GTGTCCCTGC TGCCCGTGGT GGATACCGCC GTGGACCTCA ACGCCTCACT CACAGTGAAG
TTCTAA
|
|---|
| Protein sequence | MGQTPGPVTT QIRPARPVRS VSMRTLISLA VASALGFTPL LFTSQSLAAD NTANSDQAKI
ERLQQKIDEL SEELADLDTR VNKTERHTAL DRITFSGDFR TKVHSLHYRD VTWNPGIKMN
FDDFGRRAMA GEYGDPMDPT SPLGKMMAAN PDMAAAFMGG QLSGVMPWAL GSTNTYDIDN
DLFYTTRLRL DIKANVWENV NFAGRLSMYK NWGDSTGVQV FDSWRSFSMD GTNSGNTSGD
WLRVERAYFD WKNIGGSEFY LSIGRRPSTY GPPSNIRENE QRGGTPSGHL VHFNFDGATL
GYNLGEITGI EGQVVRFCYG QGFESQWGNG ELFGNLVTED THLGGFNIDV INDGNHFVQL
TLFGAKDIND GFKGSMAFPN ELAAIFAPTM YQDMQKFDSF NFVTRVQPSG VIGDMFLGGL
GYVYESDEDF KAFASLGWTR AESNGNAGMF GGLLTDATFT GKLSADGSEL MMVPLAAESD
AAHDGYGVYI GMQMPAPYGK FGLEYNYGSK YWSPFTQAQD DPIGSKLATR GHVVEAYYLF
EVNPRMFIKL AGLYYDYEYT GSGTPVGAPV KVDDVMAGSA VSLLPVVDTA VDLNASLTVK
F
|
|---|
| |