| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3169 |
|---|
| Symbol | metF |
|---|
| ID | 4605416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3756219 |
|---|
| End bp | 3757109 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639782585 |
|---|
| Product | 5,10-methylenetetrahydrofolate reductase |
|---|
| Protein accession | YP_929041 |
|---|
| Protein GI | 119776301 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0685] 5,10-methylenetetrahydrofolate reductase |
|---|
| TIGRFAM ID | [TIGR00676] 5,10-methylenetetrahydrofolate reductase, prokaryotic form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTTC ATCACGCACA ACACGCAAAC TCACTGAACC AGAATCTGGC TGAGGTTGGC
GATATCAATG TGTCATTTGA ATTTTTTCCG CCCTCAACTC CTGAGATGGA AAAGATCCTG
TGGAACTCCA TCCGCCGCCT CGAGCCGCTG AATCCCAAGT TTGTGTCTGT AACCTACGGT
GCCAACTCGG GTGTCCGTGA CCGCACCCAC GGTGTGATTG AGCGTATCCA GCAAGAAACC
CAACTGGTTG CCGCCCCGCA CCTTACGCTG GTGGATGCCA GCGATGAAGA GTTGTTGGCC
CTGGCCAAAA ATTACTGGCA TCAGGGCATT CGCAATATTG TTGCATTGCG TGGTGACTTG
CCTGCCGGCA GCCCCAAGCC AACCCGCTTT GCCGCCGATC TGGTGCGTTT GCTGAAGAGT
GTGGCCGACT TTGATATATC GGTGGCAGCC TATCCGGAGG TGCATCCGGA AGCTGCCAAT
GCCCAGGCGG ATTTGGTTAA TCTCAAGCGC AAAATCGATG CCGGTGCCAA CCGTGCCATC
ACCCAGTTTT TCTTCGACGT AGAATCCTAT TTGCGCTTCC GTGACCGTTG TGTGGCCGCA
GGTATTGATG TGGAAATCGT ACCGGGCATT CTGCCTGTGA CCAACTTTAC CCAGCTCAAG
CGTTTTGCAG CTATGACCAA CGTGAGTATT CCCGGTTGGT TGCATCGCCA GTTTGAGGGC
CTGGAAAATG ACGCAGCTAC CCGTCAGTTG GTGGGGGCCA ACGTGGCCAT CGATATGGTG
AAGGTATTGG CCCGTGAAGG CGTGAAAGAC TTCCACTTTT ACACCCTGAA CCGTGCCGAG
CTGAGCTACG CCATTTGCCA TACCTTGGGG GTACGTCCGA AGCAGGACTG A
|
|---|
| Protein sequence | MAFHHAQHAN SLNQNLAEVG DINVSFEFFP PSTPEMEKIL WNSIRRLEPL NPKFVSVTYG
ANSGVRDRTH GVIERIQQET QLVAAPHLTL VDASDEELLA LAKNYWHQGI RNIVALRGDL
PAGSPKPTRF AADLVRLLKS VADFDISVAA YPEVHPEAAN AQADLVNLKR KIDAGANRAI
TQFFFDVESY LRFRDRCVAA GIDVEIVPGI LPVTNFTQLK RFAAMTNVSI PGWLHRQFEG
LENDAATRQL VGANVAIDMV KVLAREGVKD FHFYTLNRAE LSYAICHTLG VRPKQD
|
|---|
| |