| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3163 |
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| Symbol | |
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| ID | 4605410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3749256 |
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| End bp | 3751307 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639782579 |
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| Product | sensory box histidine kinase |
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| Protein accession | YP_929035 |
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| Protein GI | 119776295 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGTGT CCATGGCGTT TGCCTTCACA GGTTGGTACC AGTTTCATCA GTACATCAAC
GATCTCAAGG AAGAACGTTT TGAAGACATG GCGCAGGAGC TGAAATTGGC TATCGAGACC
CGTATGCTGG CCTATGAACA GGTGCTGCGC AGTGGGGTAG GCTTGTTTAA GGCATCCAAT
GGTGTGTCCC GTTCCGAGTG GCGCACCTAT GTGGCCAATG CCAAGCTGGA CAAGTACTAT
CCCGGCATTC AGGGGGTGGG GTTCAGTCAG GTGGTGCGTA AACCACAACT GCAAGCATTC
GAAGCCGCAG TCAGAGCTGA GGGATTCCCT GCATTCAAGG TTTACCCCGA TGGCGATCGC
CCCATCTATC ACTCCATTCT CTATCTCGAA CCCTTTGATT GGCGAAATCA GCGGGCCTTT
GGCTACGACA TGTATTCAGA GCCCAGGCGT CGGCGGGCGA TTGATTGGGC AACCGAAACA
GGTAACGCTG CTATTTCCGG CAAAATTACC CTGGTACAGG AAACCGGCGA AGATCTCCAG
GCCGGTTTCC TCATGTATCT GCCACTCTAC GCACGGGACA ATGCGCCAAG CGGTGATACT
TTGCTTGGCA CTGTTTATGC GGCGTTTAGG ATGGACGACC TGATTCGTGG CATCCTGGGT
AATCGATTTA CCCAGTTACA GCTGGAGATT TTTGATGGTG GCGAGTTAAT CGAAGATAAC
CTGATGTTTC GTTCTCCACG GGCTGATAGC TGGCGTCTTC AAACTGAGTT GCCCATTGAA
ATGGGGGGGC AGAAGTGGTT GCTTCATGTG GGAAGTAATG AAGATTTTCT TAGTCAGTCG
GAAGCGTTTC AGAGCCAATT AATGCTTTTT ATGGCTGTCG TTTTTCAGCT GTTAATGTTC
TATTTTCTCC TCAGTATCGC TAAAGCCAGA CATCAGGAAA GCCTGCTCTC GCGGGAGATA
ATGAACAATG AAAGCCGATT CAGATTGGTG GTGGAAGCAT CGCCCAGCGC CCTTATTATC
ACCAACAGGC GCGGTGTGAT TACTTTGGTG AACAAGCACA CAGAGCAGCT ATTTGGCTAT
ACCAGGGAAG AACTGCTGGG TAAGAGTGTG AATGTACTTT TGCCCGAAGC ATTGGCAAAG
GTGCATCAGG GGCATATGGA GTCCTATCTG GCCAATCCCA TTGCCAAGAA AATGTCGCTC
AGGGATGAAC TCTATGGCAG AACCAAATCC GGCGGTTTGG TACCTGTGGA AGTCGGTCTG
ACACCTATTC ATTTTGCTTC CGGAATTTCG GTGCTGGCCA CCATTAACGA TATTTCGGTG
CGTCGAAATA TTGAGGAGCA AAGGATGGCC CATACGCTGG AGCTGGAGCG TATCAATAAA
GAACTCGACA GTTTTGCGTA CATAGCCTCT CACGATCTCA AGTCACCCCT GCGGGGGATT
GAGCAACTTG CACAATGGAT AGAAGAAGAT CTAAAGGGCA AGTTGGACCC GTCCACCGGC
AAGTATCTGC AGCTCATTCA AAGCCGTATC CAGCGCATGT CTCAGCTGCT GGATGGTCTG
TTGCTTTACT CACGCATTGG TCGGGCCGAG GAGTCCTTCT CACCGGTGGA GGTCAAATCC
CTCATCAAAG ACATCTTTAC CCTGGTGGCA CCACCTGTTG GTTTTAATCT TAAACTCTGT
GGTGAGTTTT CCACTATCAA CACCGCCAAA GTGCCGCTGG AGCTGGTGAT AAGAAACCTC
TTCTCCAACG CCATCAAGCA CCACGATAAG GGTGAGGGAG AAATCAGTGT CAGTGTCGAA
AGTTGCGGTG ACATGCTGAA GTTCTGTGTG GCCGATGATG GGCCAGGGAT CCCAGCCGAG
TATCAGGAGA AAGTCTTCAA TATTTTTCAA ACACTCAAAG CACGGGATGA AGTCGAAGGC
TGTGGATTGG GCTTATCACT GGTGCGCAAA ACCGTAGAAC GCTATGGCGG CAAGGTCTGG
CTGATTTCTC AGGGGAGAGG ATGTCAGTTC TGGTTCTCAT GGCCAAAACA ATTGGGGGCG
CAAAAAGCAT GA
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| Protein sequence | MLVSMAFAFT GWYQFHQYIN DLKEERFEDM AQELKLAIET RMLAYEQVLR SGVGLFKASN
GVSRSEWRTY VANAKLDKYY PGIQGVGFSQ VVRKPQLQAF EAAVRAEGFP AFKVYPDGDR
PIYHSILYLE PFDWRNQRAF GYDMYSEPRR RRAIDWATET GNAAISGKIT LVQETGEDLQ
AGFLMYLPLY ARDNAPSGDT LLGTVYAAFR MDDLIRGILG NRFTQLQLEI FDGGELIEDN
LMFRSPRADS WRLQTELPIE MGGQKWLLHV GSNEDFLSQS EAFQSQLMLF MAVVFQLLMF
YFLLSIAKAR HQESLLSREI MNNESRFRLV VEASPSALII TNRRGVITLV NKHTEQLFGY
TREELLGKSV NVLLPEALAK VHQGHMESYL ANPIAKKMSL RDELYGRTKS GGLVPVEVGL
TPIHFASGIS VLATINDISV RRNIEEQRMA HTLELERINK ELDSFAYIAS HDLKSPLRGI
EQLAQWIEED LKGKLDPSTG KYLQLIQSRI QRMSQLLDGL LLYSRIGRAE ESFSPVEVKS
LIKDIFTLVA PPVGFNLKLC GEFSTINTAK VPLELVIRNL FSNAIKHHDK GEGEISVSVE
SCGDMLKFCV ADDGPGIPAE YQEKVFNIFQ TLKARDEVEG CGLGLSLVRK TVERYGGKVW
LISQGRGCQF WFSWPKQLGA QKA
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