| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3161 |
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| Symbol | |
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| ID | 4605408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3747090 |
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| End bp | 3748820 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639782577 |
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| Product | response regulator |
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| Protein accession | YP_929033 |
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| Protein GI | 119776293 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTAT TACTGGTTGA TGATGATGCA GTCGATCGTG AGATGATAGT TCGCGCGCTG
TCCCAGTCAG ACCGTGGTTT TACCGTGTCT GAGTCCTGCT ATGCCAAAGA TGCGATGATC
AAAATTAAGC AGCAGCACTT TGACGGCATC TTGTTGGACT ATATGCTGCC CGATGCCAAT
GGTCTCGAAG TCCTGACCTG GCTCAATGAC ATCAGCAACG AGAGTATTGC GGTGGTGATG
ATAAGCCGCT ACGAGGATGA AAAACTGGCT GAGCGTTGCA TAGAATTGGG CGCGCAGGAC
TTTTTGCTTA AGGATGAAGT CTCCTCGAGT CGTTTGTGCC GTGCCATTAT CAATGCAAAG
CAGCGTTTTT CTATGGCCAG GGCCCTGCGC CGAAGTCATG AAAAGTTACG TGAGCTTGCC
GAACACGACT CCCTCACCCG GCTGGTGAAT CGCTATGGCT TTGAATTGTG TCTGAATCGT
GCCCTCAGTC AGGTACGGCG TACCGGAGGT ATGCTCAGTG TTATCTTGCT TGATCTCGAT
GATTTTAAAG GCGTAAACGA TACCCTTGGC CACCAGATGG GTGATGTGCT GCTGGTGGAG
GTGGCGACAC GTCTGTCTTC GGCGCTGCGT GAAAATGACC TGATAGCACG CATTGGTGGC
GATGAATTTG TGGCCCTAAT TTGCGATCAG GATACCCGCT TTTTACCATT TGACCTCGCC
AAGCGTTTAC TCAGTACCTT TGAGGAGCCT TTCCAGCTTG GAGACAGCGC TGTGATGATG
GGAGCCAGTC TCGGCATCGC CATATACGGT GAGTGCGCCA ATACAGCTTA TGACCTGCTG
AAATGTGCCG ACATTGCCAT GTATCGCGCC AAGGAAGAGG GACGAAATCA AATCCAGTTT
TATTCCCTTG ATCTGGAAAA TGAAGTTAAA CGTCGCACCC GCATTGAGCA AGGGCTGCGA
CTTGCATTGA GTAACAATGA ACTTGTGCTC TATTACCAGG GTAAATTTGA TGCTCTGTCT
GGCTATCTCA GTGGTGTGGA GGTGCTGCTG CGCTGGCAAC ATCCTACCGA TGGCCTGCTG
GCCCCCGATA CCTTTCTGAG CATTGCCGAG GATGTTGGTT TGACCGAGCA AATTGGCAAA
TGGGTGCTCA ACACAGCCTG TCAGCAGGTG AGCCTGTGGC TGAAACAGAT TGGCCAATAT
TTGCCTGGTT TTTCAGTGGC GGTCAACTTC TCGGCGTCGC AAATTTCGGC GGTAAATCTG
GTCTCTGTTA TCGAACATGC TCTGGCAGAA AGTGGCCTGC CGGCGCACAA TCTGGAGTTG
GAAATCACCG AAAACGCCTT GATTAAAAAC CCAGAGGAAA TCGCTTCTGT GCTCGATAGA
ATTGAGAGCA TGGGGGTGAC TATGGCACTG GATGACTTTG GCACAGGCTA TTCGTCTCTC
GAGCACCTGA TGCATTTCCC TATCCAGGTT ATCAAGATAG ATAAAAGCCT GGTGGCAACA
GTGCCCCAGG ATGAAAAAGG TTGCCGCCTG TTAACGGCGC TGCTGAATTT CGCCCAGGGC
TTTGGCATGG TGTCGGTTGC CGAGGGGATT GAAACCCAGG CTCAGGCAGA TTTTTGTACT
GATCATGGTT GCAACCTGCT GCAGGGATAC TTGCTGGGCA AGCCTGTGGA TGCCAAGACA
TTTGAAACAC AATTCCTGCT GCCAACACTT ACCAAATTCC AACAGAGATA A
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| Protein sequence | MNLLLVDDDA VDREMIVRAL SQSDRGFTVS ESCYAKDAMI KIKQQHFDGI LLDYMLPDAN
GLEVLTWLND ISNESIAVVM ISRYEDEKLA ERCIELGAQD FLLKDEVSSS RLCRAIINAK
QRFSMARALR RSHEKLRELA EHDSLTRLVN RYGFELCLNR ALSQVRRTGG MLSVILLDLD
DFKGVNDTLG HQMGDVLLVE VATRLSSALR ENDLIARIGG DEFVALICDQ DTRFLPFDLA
KRLLSTFEEP FQLGDSAVMM GASLGIAIYG ECANTAYDLL KCADIAMYRA KEEGRNQIQF
YSLDLENEVK RRTRIEQGLR LALSNNELVL YYQGKFDALS GYLSGVEVLL RWQHPTDGLL
APDTFLSIAE DVGLTEQIGK WVLNTACQQV SLWLKQIGQY LPGFSVAVNF SASQISAVNL
VSVIEHALAE SGLPAHNLEL EITENALIKN PEEIASVLDR IESMGVTMAL DDFGTGYSSL
EHLMHFPIQV IKIDKSLVAT VPQDEKGCRL LTALLNFAQG FGMVSVAEGI ETQAQADFCT
DHGCNLLQGY LLGKPVDAKT FETQFLLPTL TKFQQR
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