| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3160 |
|---|
| Symbol | |
|---|
| ID | 4605407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3746106 |
|---|
| End bp | 3747011 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639782576 |
|---|
| Product | ribosomal protein S6 modification protein |
|---|
| Protein accession | YP_929032 |
|---|
| Protein GI | 119776292 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) |
|---|
| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG GTGTGTTGTC CCAATTCCCC GAGCTCTACT CGACACGTCG ATTGGTGGAG
GCTTGTGAAT CCAGGGGGCA TGAGGCCTGG GTAATAAACC CTATCAACTG CTACATGAAT
ATCAACTCGG TCAAACCCAG CATCCATCTC GAAGGGGAAG AGGTGCCCAT GTTTGATGCC
ATCATTCCCA GAATTCACGC CAGCGTTACC TTCTACGGTT GTGCCGTGGT GCGTCAGTTT
GAAATGATGG GAGTATTTGC TGCCAATGAT TCCATTTCCA TTGCACGCTC ACGGGATAAA
TTGCGGGCAT TGCAGTTGTT GTCCCGTAAA GGTATTGGCA TGCCGGTGAC AGGATTTGCC
AACAAACCCA ATAATATTCC TGACCTTATC AATATGGTAG GCGGTGCTCC TCTGGTGATT
AAACTGCTTG AGGGCACTCA GGGTATCGGT GTGGTGCTGG CTGAAACCCG CAAGGCGGCC
GAAAGTGTGA TTGAGGCGTT TTTAGGGCTT AAGGCCAACA TCATGGTGCA GGAATATATC
AAAGAGGCCA ATGGCAGCGA CATCCGCTGT TTTGTGGTGG GTGATAAGGT AGTGGCCGCT
ATGCGCAGAC AGGGCCCGGA AGGCGACTTC CGCTCTAATC TGCATCTGGG TGGTTCGGCT
GAGCCGGTGA AAATCACGCC GCAGGAGCGC AAATCCGCAG TCGCGGCCGC CAAGGCCATG
GGATTGGTGG TTGCCGGGGT GGATATTTTG CGTTCAGCCC GTGGTCCATT GGTGCTGGAG
GTGAACTCGG CACCGGGCAT CGAGGGGATT GAACAGGCAA CCGGTATCAA GGTTGCTGAA
CCCATCGTTG AGTATATTGA AAAAGTGGTG GCGGCCCGCC GGGCCAACCA CCAGGTGATT
GCCTGA
|
|---|
| Protein sequence | MKIGVLSQFP ELYSTRRLVE ACESRGHEAW VINPINCYMN INSVKPSIHL EGEEVPMFDA
IIPRIHASVT FYGCAVVRQF EMMGVFAAND SISIARSRDK LRALQLLSRK GIGMPVTGFA
NKPNNIPDLI NMVGGAPLVI KLLEGTQGIG VVLAETRKAA ESVIEAFLGL KANIMVQEYI
KEANGSDIRC FVVGDKVVAA MRRQGPEGDF RSNLHLGGSA EPVKITPQER KSAVAAAKAM
GLVVAGVDIL RSARGPLVLE VNSAPGIEGI EQATGIKVAE PIVEYIEKVV AARRANHQVI
A
|
|---|
| |