| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3153 |
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| Symbol | |
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| ID | 4605400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3740309 |
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| End bp | 3742063 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639782569 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_929025 |
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| Protein GI | 119776285 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.920716 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGCCG CCATAGATTT AAAGGCAGAA CTGACAAAAC TCATTGAAAA GCAAAGCATA
GAATCGCTTT TTCAACCCAT TTTCAATATC AGTGCCGGAA AAATCCACGG TTTTGAGGCC
CTTTCCCGAG GGCCAGTGCA CAGTCCTTTA TATTCCCCCG TCCCCCTGTT TAAAACGGCT
GAGCATGAAG GAAGACTGAG CGAGCTGGAA ACCCTTTGTC GCCAGATTGC AGCGGGGCGT
TTTGCCGAAC GAAAGCTGCC GGGAAAGCTT TTTATCAACA TCTCCCCCAA AGCCTTGTTG
GACCCGGATC ACCCCAAGGG CAAGACCCTG ACCATGCTGC AGCAATTGGG CATATCGCCA
TCACAGGTTG TCATTGAGCT ATCAGAGCAG CATCCCGCCG ACGATATCGA TCTGCTGAAA
ACCTGCCTGC TGCACTACCG CAACCAAGGT TTTTTAACCG CCATTGACGA TCTGGGTGCA
GGTTACTCTG GTCTCAGACT CTGGTCAGAA TTGGCGCCGG ACTATGTCAA AATCGACCGC
CACTTTATTC ACCAAATCGA CAAACATCCT GTCAAACAAG AGTTTGTACG CTCCATTGTG
GAGCTTTGCC AAAGCCTGAC CTGCAAGGTT ATTGCCGAAG GAATAGAAAC CGCAGCTGAA
CTGCAGGTAC TCAGACAACT CGGGATCATC TATTGCCAGG GTTTTTTGCT TGGACGCCCG
GAGGCCAACC CAAATAAACA GCTCCCCCCG GGACTGAGCC CACAGCCCAA TATCGGGCAG
AGTACCCACA GGTATATCGA AACCGCCGAA AGCTTGGCAT GTGGCGCTGT GACTGTACCC
ACTGACACAA AACTCAAGAC CATCAGCGAT CGTTTCAGTA GCCAGCCGGC ATTGCAGGCC
ATGGTGGTAG TTGAAGGCGA CACACCTCTG GGACTGATCA GTCGCACAGC CCTGCTGGAG
TTATTTTCAA CCCCCTACGG CCGCGCCCTG CATGAAAATC ACTGTGTTAC CGAAGTCATG
GACACCCGGG TGCCCCAGTT TGATGCATCA GAGGCCCTCA GCAGCGTCAG CCAACTCCTG
ACTTCTGATT CGGATCAGCT TATGGCCCAG CAGTTTTTAA TTCTGCGTCA GGACAAACTG
ATAGGCGTGG GCCACACCAA GGACTTGCTG GCCCGGATCA CAGAGCACCG AATTAAGGTC
GCCCGCCATG CCAACCCTCT CACCGGGCTG CCGGGTAATG TACCCATTCA GGAAGAGCTG
CAGCGGTTGA AACAGCAAAG CCGCCCCTTT TATCTGGTTT ATTTCGACTT GAGTCACTTC
AAACCCTATA ACGATATCTA TGGCTTTTGC CGGGGAGACG AGGTGATTTG TTATGTGGCA
TCGCTGCTTG CCGAACACCA AGATGCCGAC TGCTTTGTGG GTCACATTGG AGGCGATGAT
TTTGTGATGA TTACTACTGA CGATCCCACA TGCAGGGTTG CAGGGATCCT CAAGAATTTT
GAAGCCGAAA AACGCAGCTT TTTCCAGGAA GCGCATTGGC AGGCACAGTT TATCTCGGCC
GAAGACCGCC AGGGTGCGCT CAGTCTGCAG CCTCTGACAT CTCTGTGTGC CGGCATACTT
TCGCCAAGAC ACACCTTCAA TGCTACCGAA CATGAACTGT CGGCACTTAG CGCACGGGCA
AAAAAACAGG CAAAGCTCAC CGAAAGTGGA CTTTGCCTGC TTGGCAGTAC CCCGCCTCAG
CTGAGGCAGG CCTGA
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| Protein sequence | MMAAIDLKAE LTKLIEKQSI ESLFQPIFNI SAGKIHGFEA LSRGPVHSPL YSPVPLFKTA
EHEGRLSELE TLCRQIAAGR FAERKLPGKL FINISPKALL DPDHPKGKTL TMLQQLGISP
SQVVIELSEQ HPADDIDLLK TCLLHYRNQG FLTAIDDLGA GYSGLRLWSE LAPDYVKIDR
HFIHQIDKHP VKQEFVRSIV ELCQSLTCKV IAEGIETAAE LQVLRQLGII YCQGFLLGRP
EANPNKQLPP GLSPQPNIGQ STHRYIETAE SLACGAVTVP TDTKLKTISD RFSSQPALQA
MVVVEGDTPL GLISRTALLE LFSTPYGRAL HENHCVTEVM DTRVPQFDAS EALSSVSQLL
TSDSDQLMAQ QFLILRQDKL IGVGHTKDLL ARITEHRIKV ARHANPLTGL PGNVPIQEEL
QRLKQQSRPF YLVYFDLSHF KPYNDIYGFC RGDEVICYVA SLLAEHQDAD CFVGHIGGDD
FVMITTDDPT CRVAGILKNF EAEKRSFFQE AHWQAQFISA EDRQGALSLQ PLTSLCAGIL
SPRHTFNATE HELSALSARA KKQAKLTESG LCLLGSTPPQ LRQA
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