| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3145 |
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| Symbol | |
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| ID | 4605392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3731796 |
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| End bp | 3733430 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639782561 |
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| Product | mechanosensitive ion channel |
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| Protein accession | YP_929017 |
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| Protein GI | 119776277 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.187903 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTACAT CTTACAGCAA CAGGATGTTG AATATGCGTC TGTTAATCCC TTTCCTCTTG
GGCATGAGTC TGCTGGTTCC CACGGCAGCA CTGGCCGTCA GTGATGAGTT TCGCAGTAAT
GTTGAGCAGC TCGAGCACAC AATAGCGCAG GATCTCAAGG CCCTGTCTCA GGCCAAAGGC
GAACTGGTTG CCATCAGTGA GTATCGGATA AACCAAAAAA CGGCCGAATT GAGGCAGCTT
ATCAACGCCG AAATTGAAGC CCCGAACACA GACACCGCCT ATCTGCAAAC GCTGGTGGAA
AATCAGCTGA GTTTTATTCA GCAGACCCAA GCCTACCTGG GCAAAGACAT TCAAAGGCTT
AAAAATGCAC TCGGCAGCAG CAATGATGCC GAGCTACTGC TGGCACTGTC CAACCGGGAA
CGGGAGCGCG ACACCAACTT CAAAAAAGAA CTGCAAACCC TGGACTGGGG CAGCAAGCTG
GGCATGGACA CACAGCCACG CCGCACCGAG CTGAAGCAGG CGCTGGCCGA ACGGGCTGAT
CGCCTGGCAA GCCTTGTGAG TTACACCCAG GAACAACTCA AACAGGCAGT GGATGAAGCC
CGCACCGCGG GTAAAGATGT CAGTGCCGAG CAAACCGCCA GGGTCAGTGA GCTCAAGGCC
CGGCTGGAGC AAAACAGCGT TAGCCTGAGC ACAGTGGTCG GCTTGCTCGA AGAGCTGGGA
GCCGATACCA CGGCGCTGAA ACAGGTGCTC TTTACCGTGT CGGGTGATAT TACCCAGGAT
GTGCTGGATA TCGACCTGGT GGGCAGTCTG CTGGGTAAGT GGCTCAGCGT CGCCGAATCG
CAGGCCATAG AAAATGGTCC ACGGATGCTG TTTAAGGTGT TTATCTTCCT GCTTATTCTC
TTTGTCGCCA GTCTGGTTGC CAAACTGGTA AAGAGCGTGG TGAAAAAGGC CGTCAGTAAC
TCCAAACTCA AATTCAGCAA GTTACTGCAG GATTTCTTTG TCTCTCTTTC CGCCAAGGGC
GTGTACACCC TGGGGTTACT GATTGCCCTG TCGCAACTGG GTTTTGAACT TGGGCCCCTG
CTGGCCGGTT TCGGTATTGC CGGTGTGATT ATCGGTTTTG CGCTGCAGGA CACGCTGTCG
AACTTTGCCT CCGGCATGAT GATCCTGATT TACCGCCCCT ATGATGTGGG AGACCTAATC
AGCGCGGCAG GCGTCACGGG CCGTGTCAGC CATATGAGCC TGGTATCGAC CACCATCAAA
ACATTGGATA ATCAGCGCCT TATCATTCCA AACAATAAGA TTTGGGGTGA TACCATCAAC
AACATCACCG CCGAGCACCA TCGCCGGGTC GATATGACCT TTGGTATCAG CTATGCCGAT
AATGTCGAGC ATGCGGAAAA AATCCTGCTG GATATAGTCA ACAGCCATCC CAAGGTGCTG
AAAGACCCCG GCGTGACTGT GCGCCTGCAT CTCCTGGGTG AATCGTCAGT GGACTTTGTG
GTGCGCCCCT GGGTGCGGCC CGATGACTAC TGGGAAGTGT ATTGGGACGT GACCAAGGCG
GTGAAACAGC GCTTCGACGC CGAAGGCATT ACCATTCCCT TCCCGCAGCG GGATGTGCAC
TTCTATCGCG CTTGA
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| Protein sequence | MLTSYSNRML NMRLLIPFLL GMSLLVPTAA LAVSDEFRSN VEQLEHTIAQ DLKALSQAKG
ELVAISEYRI NQKTAELRQL INAEIEAPNT DTAYLQTLVE NQLSFIQQTQ AYLGKDIQRL
KNALGSSNDA ELLLALSNRE RERDTNFKKE LQTLDWGSKL GMDTQPRRTE LKQALAERAD
RLASLVSYTQ EQLKQAVDEA RTAGKDVSAE QTARVSELKA RLEQNSVSLS TVVGLLEELG
ADTTALKQVL FTVSGDITQD VLDIDLVGSL LGKWLSVAES QAIENGPRML FKVFIFLLIL
FVASLVAKLV KSVVKKAVSN SKLKFSKLLQ DFFVSLSAKG VYTLGLLIAL SQLGFELGPL
LAGFGIAGVI IGFALQDTLS NFASGMMILI YRPYDVGDLI SAAGVTGRVS HMSLVSTTIK
TLDNQRLIIP NNKIWGDTIN NITAEHHRRV DMTFGISYAD NVEHAEKILL DIVNSHPKVL
KDPGVTVRLH LLGESSVDFV VRPWVRPDDY WEVYWDVTKA VKQRFDAEGI TIPFPQRDVH
FYRA
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