Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3131 |
Symbol | |
ID | 4605378 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3716955 |
End bp | 3719858 |
Gene Length | 2904 bp |
Protein Length | 967 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639782547 |
Product | ATP-dependent helicase HepA |
Protein accession | YP_929003 |
Protein GI | 119776263 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTTTG CGGTTGGGCA GCGCTGGATC AGTGATACAG AATCGGAATT GGGTTTGGGC ACAGTGGTGC AGATAGAGGG CCGCATGGTT ACTCTGCTGT TTCCTGCCAC CGGTGAAAAC CGCATGTTTG CCATGGCCGA AGCGCCCCTT ACCCGGGTGA TTTATAACCC CGGAGACACC ATCGACAGCG CCGAAGGCTG GGGCATGACG GTGGACAAGG TCGAAGAATT AAACGGCCTG GTATTTTATT TGGGCAAGCG CACCGACACC GGTGAAGACA CCATGCTGCG CGAGACCCTG CTTGAGCACA ATATTCGCTT CAACAAGCCC CAGGATCGCC TGTACGCCGG CCAGATTGAC CGTATCGAGC GCTTTGGCGT GCGTTACAAG GCGCAGTTGC TGCGCCACAA GCAAGCCACC TCGCCACTGC TGGGTCTGCA GGGTCCACGG GTTGGCCTTA TTCCGCATCA GTTGTGGATT GCCCATGAAG TGGGCCGCCG CCATGCCCCA CGGGTATTGC TCGCCGACGA AGTGGGTCTG GGTAAAACCA TCGAAGCGGG TCTGATTATC CACCAGCAGC TGATGACAGG CCGCGCCGAG CGCGTACTGG TGATAGTACC GGACACCCTG CGCCACCAAT GGCTGGTTGA AATGCTGCGC CGCTTTAACC TGCGCTTCTC CGTGTTTGAT GAAGACCGCT GCGTAGAGGC CTTTGCCGAT CACGACAACC CCTTCTACAC AGAGCAGCTG GTGATTTGCT CGCTGGAGCT GCTGCGCAAG AAACGCCGTT TGGAGCAGGC GCTGGATGCC GATTGGGATC TGATGGTGGT GGACGAAGCG CACCATCTGG AGTGGAGCGA AGACGAACCC AGCCGCGCCT ACCAGGTGGT TGAGGCCCTC GCCGAAGTGG TGCCCGGTGT CCTGCTGCTT ACCGCCACCC CGGATCAACT GGGCCACCAG AGCCACTTTG CCCGTTTGCG CCTGCTCGAC CCTGACCGTT TTTACGACTA TCAGGCTTTC CTCGATGAAG AGAAAGGCTA CCAGGCCGTG GCCGAAGCCG CCGATGCCCT TGCCAGCGGC ATCAAGCTTT CCGATGAGGC CATCAACGGC CTGACTGAGC TGTTGTCAGA GAAAGACATA GCCCCGGCTA TTCGCCAGAT CCAGGCCGAA AATCTTGACG AAGAACTGCG CCAGGCCGCC CGGGACGAGC TGCTGCAGGA GCTTCTGGAC CGCCACGGCA CCGGCCGCGT GCTGTTCCGC AACAGCCGCG CCTCGGTCAA AGGCTTCCCC AAGCGCGAAT TCCACAGCCA CGGCTTCGAA CTGCCGGAGC AATACGTAAC CGCCATGCGG GTAAACGCCA TGATGGGCGG CGCCCGCACT CAGGAAGCCC GGGTGGCACA GGCTCTGAGC CCCGAGCGTA TCTATCAGGA ATTCGATGAC AATAACGCCA GTTGGTGGAA GTTCGACCCA AGGGTCGACT GGCTTATCGA CTTTTTGAAA TCCCACCGCT CCAAGAAGGT GCTGGTGATT GCCAGCCGCG CCGAAACAGC ACTGGCGCTG GAAGAAGCCC TGCGTACCCG CGAAGGCATA CAGGCCACCG TATTCCACGA AGGCATGTCC ATCATTGAAC GCGACAAGGC CGGGGCTTAC TTTGCCCAGG AAGAGGGCGG CGCCCAGGCA CTTATCTGCT CTGAAATCGG CTCTGAAGGC CGTAACTTCC AGTTCGCCAG CCAGCTGGTG CTGTTCGACC TGCCCCTGAA TCCGGATCTG CTGGAGCAGC GTATCGGCCG TCTGGACCGT ATCGGTCAGC GCCACGATGT ACAGATCCAC CTGCCATTCC TCAAGCACAC TGCTCAGGAA CAGCTGATGC ACTGGTACCA CGAAGGCCTG TGCGCCTTCG AACTCACCTG CCCCGGTGGC CATGTGCTCT TTGGCGAGTT TAAAGAGCGC CTGCTCAGTG TACTGACCGG CGAGAGCGAT GAACTGGACG AACTGATGGC AGACACCAAG GCCCGCTACA AGGCGCTGAA AGCCGCCATG GAGCAGGGTC GCGACAAGCT GCTGGAACTC AACAGCCACG GTGGTGCCAA GGCCGAAGCC ATCACAGCAA GCCTCAGCGA CGCCGACGAG GATACCGACC TTATCGCCTC AGTTATCCGC CTGTGGGACG TGATAGGCAT AGATCAGGAC GACAAGGGTG AAAACTCCAT AGTGCTGCGC ACCACGGAGC ACATGATGTA TCCCACCTAC CCCGGTCTCA ACGAGGATGG GGTGACTGTG ACCTTCGATC GCAACACGGC ACTGTCGCGG GACGATATCG CCCTTATCAC TCTGGAGCAC CCACTGGTGC AAACCGGGCT TGATCTCATC ACAGGCTCAG ATACAGGCAC CACCTGTGTG GCACTGCTGA AAAACAAGGC GCTGCCGGCG GGCACGATTT TCCTCGAGCT GATTTACCTC GCCGAAACCA CCGCGCCCAA GGCCAGCCAG CTGTACCGCT ATCTGCCGCC CACGCCGGTG CGGGTGCTGC TGGATAAGAA CGGCAATAAC CTGTCTGACA AGGTGGACTA CGACAGCTTC GATAAGCAGC TCTCCGGGGT GAATCGCCAT ATTGCCAGCA AGCTGGTTAA CGCCTCACAG ACCATGCTGC ACCCGCTGTT TGCCAAAGGT GAAGAGTTCG CCGGTGAGGC ACTTGAAACC CTGACCCAGG ATGCCAGGGC GCGCATGGAA AGCCAGCTGG GCGCCGAGCT GTCAAGGCTT GAGGCTCTCA AGGCCGTCAA CCCCAGCATC CGCGAAGAGG AGCTGGAGCA CCTGCGCAAT ATGATGCAGG AGTTGTCGGG TTACCTTGGC AACACCCAGT TGAAGCTGGA TGCCATCCGC CTGGTACTGG TGAGCCATAA CTAA
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Protein sequence | MSFAVGQRWI SDTESELGLG TVVQIEGRMV TLLFPATGEN RMFAMAEAPL TRVIYNPGDT IDSAEGWGMT VDKVEELNGL VFYLGKRTDT GEDTMLRETL LEHNIRFNKP QDRLYAGQID RIERFGVRYK AQLLRHKQAT SPLLGLQGPR VGLIPHQLWI AHEVGRRHAP RVLLADEVGL GKTIEAGLII HQQLMTGRAE RVLVIVPDTL RHQWLVEMLR RFNLRFSVFD EDRCVEAFAD HDNPFYTEQL VICSLELLRK KRRLEQALDA DWDLMVVDEA HHLEWSEDEP SRAYQVVEAL AEVVPGVLLL TATPDQLGHQ SHFARLRLLD PDRFYDYQAF LDEEKGYQAV AEAADALASG IKLSDEAING LTELLSEKDI APAIRQIQAE NLDEELRQAA RDELLQELLD RHGTGRVLFR NSRASVKGFP KREFHSHGFE LPEQYVTAMR VNAMMGGART QEARVAQALS PERIYQEFDD NNASWWKFDP RVDWLIDFLK SHRSKKVLVI ASRAETALAL EEALRTREGI QATVFHEGMS IIERDKAGAY FAQEEGGAQA LICSEIGSEG RNFQFASQLV LFDLPLNPDL LEQRIGRLDR IGQRHDVQIH LPFLKHTAQE QLMHWYHEGL CAFELTCPGG HVLFGEFKER LLSVLTGESD ELDELMADTK ARYKALKAAM EQGRDKLLEL NSHGGAKAEA ITASLSDADE DTDLIASVIR LWDVIGIDQD DKGENSIVLR TTEHMMYPTY PGLNEDGVTV TFDRNTALSR DDIALITLEH PLVQTGLDLI TGSDTGTTCV ALLKNKALPA GTIFLELIYL AETTAPKASQ LYRYLPPTPV RVLLDKNGNN LSDKVDYDSF DKQLSGVNRH IASKLVNASQ TMLHPLFAKG EEFAGEALET LTQDARARME SQLGAELSRL EALKAVNPSI REEELEHLRN MMQELSGYLG NTQLKLDAIR LVLVSHN
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