Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3129 |
Symbol | |
ID | 4605376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3711339 |
End bp | 3715049 |
Gene Length | 3711 bp |
Protein Length | 1236 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639782545 |
Product | sensory box histidine kinase/response regulator |
Protein accession | YP_929001 |
Protein GI | 119776261 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCGA CTGAGCCGGA TTTGCAGCTC AAATCGCCTA TTCAGCGCAA TTACAACCGC GCCGTGTTTT ACACCTACAT AGGTGTAATT GTGATGGCGT GCCTGACCGC CTGGTTTTTC TTCGACCGGG AAAAGACCCA GCAGCTGGCC CAGCGCGAAG AGCAAATTGA CCGCCATGTA CTGCAAATCG ACCTCTTGCT GGAGTCCAGC ATACGGGCGG TAAAGAGTTT GCGTGATGTG GCCGTAGACC ATTTGCGCCT TGGCGAGCTG GTGCGTAAAG ACCGCTTGCC CCAGTACGAA AAATTCAACG AAGACGGCCA GTACTTCACC CTCGAGCCCC ACTATGCCCA GGGCAATAAA CCCTTTAATA ACATGGGCCG CATCACGGGC ATTGGTTCCC TTAAGGACAG AAGTGACAAG TTCTATCAGG AACTGGAAAT GCTGTTCGAG CTGTCTTTGT CTTTCCCGGT GGCCAAAGAG GCTGCCCCCA AGGCATCGGC CATTTACTAC ATTTCCAAAC GGCGGATGAT GTCGTATTTC CCCTGGCCGT TGGACGAGCA GCGCTTTCGC GACGAACTGC TGAACAAGAA ACAGTTCCAG TTGGCGACCC CGGCCATGAA CCCCCAGCGC AGCGTGTTCT GGAGTGAGGC CTATCTCGAC TCCACCGACA AGGGGCTGCT GACCACCCTG GGTGTGCCCA TTTACCTCGA AGATGAGTTT ATTGGCTCCA TCAATCTGGA CATGACCCTG GCGTCGCTTG CGCGGCAAAT CCGTCTCTAC TTCAAGATGC CGGGCACGGT CATCCTGCTC GACCAGAGCA ACAACATACT GTCCCACTCC GACATGGCGG GCAACGACCT CAAACGGGTG CTGCACATCA GCCAGAAAAT CCCCTCTGAG CTGCACTCGC TGCCGGAGTC AGAACTCTTC GATGCCCAGG GCGGCATTAT CCGTAACGGT TACTACATTC ACTCGGTGGC ACTGCACAAT GCGCCCTGGC GTCTGCTGTA CATACAGGAT GTGGACGACC TCTTTCAGGA GAGCTGGGAC AAGCTGCAGC TGACTTTCAT TCTGGTGGTT CTGGCGCTCT CAGTGCTGGT GACCATAGTG CACTGGCAGA CCCGCCGCTC CTTCGTAAGC CCTGCATCAA GGCTGCTGTC ACACCTCGAA GGCTGCTCCC AGCAACCCCG TGCAGTACCG GAAAAAATCA CCCCGGGCTG GGAGCCATGG TTCCAGCTGG TAAGTCGTAT TTTTGAAGAA AACCAGCAAT ATACCAAACA CCTGGCCGAG CAGAATAAGC GCCTCGACAA GCTGGTGGCG CGCCGCACCG AGCGTCTAAA AGAAACCACA GAGCGCCGCG AGCGCGAATA CGCGTTGCTG CGCTCTTTGC TCGACTCCAT CCCCGAGGCC ATTGTCTTCA AAGACAAGGA AGGCCATTAC CTTGGCTGTA ACAAGGCCGC CGAGCGTATG TTGGGCTTCA GCGAGGCCGA GATGATTGGC CTGTCCAGCG AGGAGCTGAC ATCACCGGAG CAGGGCAGCC GCATCCGTGC CGAAGACGAG CAGGTACTGA CAGAACGCAA GCCGCTGCGC TATCAGGAAA AAATCGAACT GGCTGGCAAA CCTGTGCTGC TCGATACCCT CAAACTGCCC TTCTACAATC GCCGTGGTGA GCTGATGGGC CTGATTGCAG TGTGGCGTGA TGTTACCCGA GAATACGAAT CTGCCGAGCA ATTACGGCTG TCGGAAGAGC GATACCACCT CGCCATGGAC GCGGTGGAAG ATGGCCTGTG GGACTGGTAT CTCGACTCAG AGCAAATCAT CTGCAACCCG GCCTATTACT CCATGCTGGG TTACAAGACC AACGAGTTCC CGGCACTGCT CTCCACCATC GACAGCCTGA TCCATCCGGA CGACCGCATC CGGGTGCAGG AATACCGCGA GCAGTACCTG AAAGACCCCA TTGGCGCCTA CGAGATTGAG TTCCGGATGC GCGCCAAAAC GGGCCAGTAC CATTGGATGC TGAGCCGTGG CCGGGTAGTG GAATTTACCC AGGATGCCCA GCCCAAGCGG ATGGTGGGTA CCCACAAAGA TATTACCCGT CACAAGAGTA ACGAAGTGGC GCTGCTTGAG GCCAAGCAGG ATGCGGAGCT GGCCAACCTC TACAAGAGTG AATTCCTGGC CAATATGAGC CATGAAATCC GCACCCCAAT GAACGCCATC ATAGGTATGT TGCAACTGGC GGGGCGCACC AGCCTGACCG AGCAGCAAAA GGATTACCTG GATAAGGCGA GCTTCTCGGC CCAGTCGCTG CTGCGCATCA TCAACGACAT CCTCGACTTC TCCAAGATTG AAGCCGGTAA GCTGGAGCTG GAAAAAGTCG CCTTCCCGCT GGACAAGGTG CTGGACCACT CACTGGATCT CAACGCCCTG CGGGCGCAGG AAAAGGGTAT TGAACTCCTG CTGTACGCCC CTGTATCGGC GGGCATCATG CTCAAGGGCG ACCCGCTGCG TTTGGGGCAG GTGCTGATTA ACCTCCTGTC CAACGCCGTG AAGTTTACCC AAAACGGTGA AATTGAACTC GGCTGTGAAG ATGTGGGCGA GCGCGACCAC CGCATCACCC TCAAGTTCTG GGTGCGGGAT ACCGGTATCG GCATCAGCCG CGAGCAGCAG GACAAGCTGT TCGATGCCTT TGCCCAGGCC GATGGTTCCA CCACCCGCAA GTACGGCGGT ACGGGCCTTG GCCTGTCCAT CAGTAAACAT CTGGTGTCCA TGATGGGCGG TACCATGCAG GTGGAGAGTG AGCCCGGCGT GGGTTCCACC TTCAGCTTTA CCGTGAGTTT TGAAATCGCC GAAGAGGCCA AGGTCGTCCC CATGGTGGTG CCCGAGCGTC TGGCGAGCCT GCGTACCCTG GTGGTGGACG ATAACCCCAC GGCGCTGCAG ATTTATTCCA GTGTGATGCG CGACTTCCAC TTTGAAGTGG AAACCGCCTC CACCGGCGCC GAGGCCCTGT ACAAGCTCTG CAAACAGCAG GTGGATCTGG TGCTGCTCGA CTGGATGATG CCCGAGATGG ACGGCATTCA GGTGATAGAT GCCATCGATG AGATGGTGGC CGAAGGCAAG CTTGCTGCCC GGCCGGTGAT TATCATCATG ACCGCCTACG CAGCCGAGCC GCTGAAGGTG GATCTCGACA GTGATCGCGT GTTTGCCATG CTGCAAAAGC CGTTCAAGGC ATCCAGCCTG TTCGATGAAA TCATCCGCGC CTTTGCCCCG CCCGCCCCCA AAGCGCTGCC CGCACCGCCG GTGGAGGATG AGGGTGAACA TCAGGGCGTG GTGCTCTTGG TGGAAGATAA CTTTATCAAC CAACAGGTGG CCACCGAGCT TTTGAAGAGC GCCGGTTATG AAGTGGATGT GGCCGACAAC GGCCAGATAT CGCTGGAGAT GGTGGGCAAG CGCAGTTACG ATGCGATACT CATGGATATT CAAATGCCTG TGATGGATGG CCTCACGGCG GCAACTGAGC TGCGTAAGCG CTACAGCTTC GATGAGCTGC CGATTATCGC CATGACAGCC CACGCCATGT CCGGCGACCG GGAAAAGAGC CTCGCCGCTG GCATGAATGC CCACATTACC AAGCCCATAG TGCTCAACGA ACTCTTTGAA ACCCTGAGCC ACTGGATAGG ACATAAAGAA AAACACAGGG GCAACCCCTA G
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Protein sequence | MKSTEPDLQL KSPIQRNYNR AVFYTYIGVI VMACLTAWFF FDREKTQQLA QREEQIDRHV LQIDLLLESS IRAVKSLRDV AVDHLRLGEL VRKDRLPQYE KFNEDGQYFT LEPHYAQGNK PFNNMGRITG IGSLKDRSDK FYQELEMLFE LSLSFPVAKE AAPKASAIYY ISKRRMMSYF PWPLDEQRFR DELLNKKQFQ LATPAMNPQR SVFWSEAYLD STDKGLLTTL GVPIYLEDEF IGSINLDMTL ASLARQIRLY FKMPGTVILL DQSNNILSHS DMAGNDLKRV LHISQKIPSE LHSLPESELF DAQGGIIRNG YYIHSVALHN APWRLLYIQD VDDLFQESWD KLQLTFILVV LALSVLVTIV HWQTRRSFVS PASRLLSHLE GCSQQPRAVP EKITPGWEPW FQLVSRIFEE NQQYTKHLAE QNKRLDKLVA RRTERLKETT ERREREYALL RSLLDSIPEA IVFKDKEGHY LGCNKAAERM LGFSEAEMIG LSSEELTSPE QGSRIRAEDE QVLTERKPLR YQEKIELAGK PVLLDTLKLP FYNRRGELMG LIAVWRDVTR EYESAEQLRL SEERYHLAMD AVEDGLWDWY LDSEQIICNP AYYSMLGYKT NEFPALLSTI DSLIHPDDRI RVQEYREQYL KDPIGAYEIE FRMRAKTGQY HWMLSRGRVV EFTQDAQPKR MVGTHKDITR HKSNEVALLE AKQDAELANL YKSEFLANMS HEIRTPMNAI IGMLQLAGRT SLTEQQKDYL DKASFSAQSL LRIINDILDF SKIEAGKLEL EKVAFPLDKV LDHSLDLNAL RAQEKGIELL LYAPVSAGIM LKGDPLRLGQ VLINLLSNAV KFTQNGEIEL GCEDVGERDH RITLKFWVRD TGIGISREQQ DKLFDAFAQA DGSTTRKYGG TGLGLSISKH LVSMMGGTMQ VESEPGVGST FSFTVSFEIA EEAKVVPMVV PERLASLRTL VVDDNPTALQ IYSSVMRDFH FEVETASTGA EALYKLCKQQ VDLVLLDWMM PEMDGIQVID AIDEMVAEGK LAARPVIIIM TAYAAEPLKV DLDSDRVFAM LQKPFKASSL FDEIIRAFAP PAPKALPAPP VEDEGEHQGV VLLVEDNFIN QQVATELLKS AGYEVDVADN GQISLEMVGK RSYDAILMDI QMPVMDGLTA ATELRKRYSF DELPIIAMTA HAMSGDREKS LAAGMNAHIT KPIVLNELFE TLSHWIGHKE KHRGNP
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