| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3126 |
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| Symbol | |
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| ID | 4605373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3706716 |
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| End bp | 3708083 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639782542 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_928998 |
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| Protein GI | 119776258 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.113083 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGACA GACACGGCCT TTTAACAGCA CCCATAGCAG GCGTGCTTTT AAAAATGACC
CTGCCCAACA TGCTGGGGAT TTTAACCATT CTGGGGTTCA GTCTGGTCGA TACCTTTTTT
GTGAGCCAGC TGGGCACAGA GGCCCTGGCC GCCATCAGCT TTACCTTTCC TGTTACCCTG
GTGTTGTCCA GCATTGCCGT GGGCATAGGC GCCGGGGTGT CCACCAATCT GGGCCGTTTG
ATTGGCTCGG GCCATGCCCC CGATGCCAAA GTATTTTTGC ACGACGCCCT GCTGCTGACC
TTTGCCATAG TAGGCACACT GGCCTCGCTG GGGCTGATGT TTATCGACCC CCTCTTCAGC
CTGCTGGGTG CCAACGAACA AAGCCTGCCG CTTATCCATG AATACATGCT GGTATGGTAC
CTGGGCAGCC CGCTGTTGGT GCTGCTCATG GTGGGCAATC AGGGGCTGCG CTCCACCGGC
GACACCAAGT CACCGGCCAA AATCATGGCG CTGGCGGCCA TCATCAACCT CATTCTCGAC
CCCTTGCTGA TTTTTGGTTT GGGCCCTTTC CCCCGGCTGG AAATTCAGGG CGCGGCCATC
GCCTCTGTGA TTTCATGGGT GCTGGCGATG TCGCTTTCAA GCTACCTGCT GATTGTGAAA
CGGCATATGC TGGCGCTCAC CGAAATCGCC TGGCCCAGAC TTAAGGACAA CTGGCGCAAA
CTGGCCCATA TCGCCCAGCC TGCGGCGCTA ATGAACCTGA TGAACCCCAT CGCCAATGCC
GTGATCATGG CCATGCTGGC CCGCATCGAC CATGGCGCCG TGGCCGCCTT TGGCGCAGGC
ACAAGGCTTG AGTCTGTGCT CTTGATTGTG GTGATGGCGC TGTCGTCCAG CCTGATGCCC
TTTGTGGCGC AAAACCTCGG CGCCGGGCAG CACCAAAGGG CGCGGGACGC TTTGATGATG
TCGCTGCGCT TTGTGCTCCT GTTTCAGTTT TTGCTGTATC TGCCCTTGCT GCTGCTGGCG
GGCCCTATTG CGGGCCTCTT CAGCGATGAG CCCAAGGTGG TGGAATGGCT GACCTTTTAC
ATTATCGCCC TGCCCGCCGC CTACGGGCCG CTGGGGGTGG TGATCATCAC CGCCACCGCC
CTCAATGCCT TCCACCGGCC ACTGGCGTCG CTGATTATCA ACGTGTGCCG CCTGTTTTTA
CTGATGTTGC CCCTGTGCGC CCTGGGCTCC TTCCTTTACG GCGTAAAAGG CCTGATGGTG
GCGCTGCCGG TCACCAACGC CCTGATGGGC ATTGCCTGTT ATTACCTCGC CAGCCGGGTG
ACCGAGCCTG ATACTGTACC GGGCGCGGGC GAGAAGGCGA GGGGCTAG
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| Protein sequence | MKDRHGLLTA PIAGVLLKMT LPNMLGILTI LGFSLVDTFF VSQLGTEALA AISFTFPVTL
VLSSIAVGIG AGVSTNLGRL IGSGHAPDAK VFLHDALLLT FAIVGTLASL GLMFIDPLFS
LLGANEQSLP LIHEYMLVWY LGSPLLVLLM VGNQGLRSTG DTKSPAKIMA LAAIINLILD
PLLIFGLGPF PRLEIQGAAI ASVISWVLAM SLSSYLLIVK RHMLALTEIA WPRLKDNWRK
LAHIAQPAAL MNLMNPIANA VIMAMLARID HGAVAAFGAG TRLESVLLIV VMALSSSLMP
FVAQNLGAGQ HQRARDALMM SLRFVLLFQF LLYLPLLLLA GPIAGLFSDE PKVVEWLTFY
IIALPAAYGP LGVVIITATA LNAFHRPLAS LIINVCRLFL LMLPLCALGS FLYGVKGLMV
ALPVTNALMG IACYYLASRV TEPDTVPGAG EKARG
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