| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3110 |
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| Symbol | |
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| ID | 4605357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3683153 |
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| End bp | 3686578 |
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| Gene Length | 3426 bp |
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| Protein Length | 1141 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782526 |
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| Product | putative integral membrane sensor protein |
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| Protein accession | YP_928982 |
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| Protein GI | 119776242 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0940316 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAATT GGATAGTCAC CCAGTTTAAT ATTCCGGAGC AGAGCACCCT CATCTACGGC
AATTACAGTG TGCCCATGGT GATCACCTCA GTGCTGATTG CCATTTTTGC CTCCTTTATG
GCACTGCATG TGGCCTATCA GGCGGGGCTC ACCCGCTCCA GCGCACGCAA ACACATATTG
CTGTTTATCG GCAGTCTGGC GTTGGGTGTT GGCATCTGGT CGATGCATTT TGTCGGCATG
CTGGCATTCG ACTTATGCAC TCCGGTGCAA TACGGAAAGA CCCTGACACT GGTGTCCATG
CTTCCCGGTA TCGCCGCGTC CTGGGTGGCA CTGCATCATA TCCACCGCCA CACAAAAGGC
CTTAAACCTC TGATTATTGC TGGCATTCTT GTCGGTGCGG GTATAGGCAC CATGCACTAC
AGCGGTATGG CGGCCATGGA AATGGCACCG TCTTTGCGCT ATAGCCTGCC CATGTTTGGA
CTGTCGATTG TGGTGGCAGT GAGTCTGGCC ATGTTATCGC TCTGGGTACG CTGCGGCCTT
ATCAGCCGGG GCAGCATTCC TTTGTGGTGC GCCAATCTAC TCGCCAGCAT AGTCATGGGC
AGTGCCATTA CCGGTATGCA TTACACAGGC ATGGCGGCAG CTCGCTTTGT TAAACCACCG
GGGCTTGAAC TGAGCCCCCA GCCGCCGGAA ATGTCCTTTT ATCTGGCACT TGGGGTGACC
ACGGCGACCC TGGTAATGAC CAGTCTGGTG CTGGGCCTTA GCCTGATTTA CAAGTACAAG
GATATTTCCC TGCGCGCCTC AGAGAGTAAG CGCAGGGTGC AGGCCATCAT GGAAACGGCC
ATCGACGGCA TAGTCACCAT CGACAGCCAC GGCATTATCA CAGACGTTAA CCAGGCCACA
GAAAAGCTGC TGGGCTGGCG CGCCGATGAG CTGATTGGCC AGAACGTCAA GATACTGATG
CCAGACCCCT TTCACTCCGA GCACGATGGT TACCTCGCCC GCTATCTCGC CACTGGCGAG
GCACGCATCA TTGGCAAGGG GCGCGAAGTC GAAGCCATAC ACAAAAACGG CCACAAGATT
GCTATCCGCC TCGGGATTGG CCATGTCAAA ATGGCGGAAG ACGACTTCTT TGTGGCCTTT
ATCTCCGACA TTCGCCAGCG CCTGAGCATG GAAATGGCAC TGCGGGAAAA CGAGCAAAAG
TTCCGCTCGC TCATCGGCAA TATTCCCGGT ATCGCCTATC GCTGTAAAAA CGATGAACAA
TGGTCGATGA TTTTTATCAG CAACGCGGTA GAGAAAATCA CAGGTTACCC AGCCAGCGAC
TTTATGTTGC CAAGCCCCAA ACGCAGTTTC AGCGACCTGT TCCACCCCGA TGATTTAGAG
CACATCAATA ATGCCGTGCC GCCGGTGGGC GCTTTCAACC TTGAATACCG CATTCTTCAT
CGCAATGGCG ACATCCGCTG GATGATGGAG TACGGCAACC ATGTTCGCGA TCAGCAAAGC
GGCGAGATGT ACCTCGATGG TTTCATCATG GACATCACTG AGCGGCGTCA GATGGAGCAG
GAACTGCTGG AGGCCAAAGA TATCGCCGAG GCCGCCGCCA CCGCACGCGC CGCCTTCCTG
GCGAATATGA GCCACGAAAT CCGCACCCCG ATGAACGCCA TCATAGGCTT CAGCGACATA
CTGCTGGAAA GTCAGTTTGA ACCCGAAAAA CACCGGCATC TGAAAACCAT CAACCATGCC
GCCAAGTCGC TCCTGCACCT GCTAAACGAC GTGCTTGACA GCGCCAAGCT CGACAAGGGC
AAGCTGGAGC TTGAAGTCCG CGACTTCTCA CTGGTGCAGG AGCTGGATGA AGTGATTTCC
ACCCTCTGGT TGCAGGCCCG CCGCAAAGGG TTGCAGCTTA CGATGGAGGT ATCACCCAAG
CTGCTGCCCT GTTACGCGGG TTCGCCCGAG CGTATCCGTC AGGTGCTCAC CAATCTGGTC
AGTAACGCAG TCAAGTTTAC CGAAAAGGGC CAGGTCAGGC TCACTGTCAA CCCGGGCCAA
GGCAACCATG TGGACTTTGT GGTGGAAGAC ACGGGCATAG GCATGAGCCC AGAACAGCTC
GATAAGATAT TCGACCCCTT TACCCAGGCC GACGCCTCCA TGAGCCGCCG CTTTGGCGGC
ACTGGCCTTG GCACCACCAT CAGTAAACAA CTGGTTGAGC TGATGGGCGG CCACATCAGC
GCCGGGAGCG AGCTTGGCAA GGGCAGTCGT TTCTGTTTCA GTCTGCCGCT TAACCCGGGT
GTGTGCGACG AGCTGGTACC GCTTGAGAAC CATGTCAGCC TGCCGCCAAT GACGGTACTG
GTAGTGGACG ATATCGCCCA GAATCTGGAG CTGCTTTCCA CCCTGCTGGG GCGCGATGGC
CACAGGGTTA TTACCGAAAG CGACGGCCAG CAGGCACTGG CACGCATGGC CAGTGAACCC
GCGATTGATC TGGTGCTGAT GGACGTGCAA ATGCCGGTGA TGGATGGTTT AAGCGCCTCC
AGGGCGCGGC GTGACAAAGA GCAACGCGAA GGGCTGACGC ATCTGCCCAT CATCGCCCTT
ACCGCCAGCG TACTGGAAGA CGATCGCACC GCCGCCCGTC AGGCGGGCAT GGATGGCTTT
GCCAACAAGC CCATCGATTA TCCGCTGCTG TGCGCAGAAA TTGCCCGGGT ACTGGGGCTC
AAACATGCCC CCATTGAAGC AGCCACACCC CAAAGCCAAC CCGGTAAACT CATCGATGAG
AAAAAAGGAA TGGATCTCTG GGGCTCCCGC GACAGCTACT ACCGTCAACT GGCGTTGTTT
GTCGAGGAGC AGGCCGAGCA GTTTGAGCGC CTGTCGTCCC AGTGCCATGC CTGCGACTGG
CCCGCGTTAA AGCAAACGGC CCACGGCCTC AAGGGGGTGA GCGCCAACCT GTCCCTCACC
CGTTTAAGCC GCAATCTCGA AAAGCTCGAG TCGCTGCTGG CAAGCCACCC TGAGCAATGT
GCCCTCTTTG TGGCACCCAT TCAGCAGGTG TTTGCCGCCG TAAAAGCCGA GGTACAGTCC
AGTGGTTATG GTGAAGCCGC CTCCTCAGGG TGCAGCGCTT TGGGCGAGCC TCTAACAGCC
CCCGAAAAAT ACAGCGCTGA GCTTATGCCA CTGCTTACCA GCCTCAGGCA ACAAGCCGGA
GACAACGCCC TCGACGAGCC GCTGCTGGAA AAGCTGTTAA GCTTTGAAGA AGGCGCCTGT
GGCAGTCAGA TACGGGCCAT CTATCAGGCC TTGAACGACT TTGAATTCAG CGAGGCCGAA
CAGCGTATCG ACGCACTACA GCGTGAAATT TCGGCATCCT TGTCCTCATA TCAGACAACA
GCACAGTCAG CCAATAATCC GGCACAAGAC GCGGCGCAAT CGAATAACGG CACAAAGGAG
CAATAA
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| Protein sequence | MLNWIVTQFN IPEQSTLIYG NYSVPMVITS VLIAIFASFM ALHVAYQAGL TRSSARKHIL
LFIGSLALGV GIWSMHFVGM LAFDLCTPVQ YGKTLTLVSM LPGIAASWVA LHHIHRHTKG
LKPLIIAGIL VGAGIGTMHY SGMAAMEMAP SLRYSLPMFG LSIVVAVSLA MLSLWVRCGL
ISRGSIPLWC ANLLASIVMG SAITGMHYTG MAAARFVKPP GLELSPQPPE MSFYLALGVT
TATLVMTSLV LGLSLIYKYK DISLRASESK RRVQAIMETA IDGIVTIDSH GIITDVNQAT
EKLLGWRADE LIGQNVKILM PDPFHSEHDG YLARYLATGE ARIIGKGREV EAIHKNGHKI
AIRLGIGHVK MAEDDFFVAF ISDIRQRLSM EMALRENEQK FRSLIGNIPG IAYRCKNDEQ
WSMIFISNAV EKITGYPASD FMLPSPKRSF SDLFHPDDLE HINNAVPPVG AFNLEYRILH
RNGDIRWMME YGNHVRDQQS GEMYLDGFIM DITERRQMEQ ELLEAKDIAE AAATARAAFL
ANMSHEIRTP MNAIIGFSDI LLESQFEPEK HRHLKTINHA AKSLLHLLND VLDSAKLDKG
KLELEVRDFS LVQELDEVIS TLWLQARRKG LQLTMEVSPK LLPCYAGSPE RIRQVLTNLV
SNAVKFTEKG QVRLTVNPGQ GNHVDFVVED TGIGMSPEQL DKIFDPFTQA DASMSRRFGG
TGLGTTISKQ LVELMGGHIS AGSELGKGSR FCFSLPLNPG VCDELVPLEN HVSLPPMTVL
VVDDIAQNLE LLSTLLGRDG HRVITESDGQ QALARMASEP AIDLVLMDVQ MPVMDGLSAS
RARRDKEQRE GLTHLPIIAL TASVLEDDRT AARQAGMDGF ANKPIDYPLL CAEIARVLGL
KHAPIEAATP QSQPGKLIDE KKGMDLWGSR DSYYRQLALF VEEQAEQFER LSSQCHACDW
PALKQTAHGL KGVSANLSLT RLSRNLEKLE SLLASHPEQC ALFVAPIQQV FAAVKAEVQS
SGYGEAASSG CSALGEPLTA PEKYSAELMP LLTSLRQQAG DNALDEPLLE KLLSFEEGAC
GSQIRAIYQA LNDFEFSEAE QRIDALQREI SASLSSYQTT AQSANNPAQD AAQSNNGTKE
Q
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