| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3090 |
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| Symbol | |
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| ID | 4605337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3665309 |
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| End bp | 3665752 |
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| Gene Length | 444 bp |
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| Protein Length | 147 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639782506 |
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| Product | nitrogen regulatory IIA protein |
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| Protein accession | YP_928962 |
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| Protein GI | 119776222 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
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| TIGRFAM ID | [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.233626 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.137697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAACTAA GTACCATCCT GGCGCCGGAG TGCACTAGCT GTGCCACTCC GGGCAGCAAG
AAAAAGGTGC TGGAGCTGAT TAGCGATCTC GCTGCTGCCC AGAATCCCTC CCTCTCGTCT
CAAGAGATAT TCGAAAGCCT GCTGGCCCGT GAAAAAATGG GTAGCACAGG TATTGGTAAT
GGTATTGCCA TTCCCCATGG ACGCCTTGGC ACTATAGATA AGCCCTTAGC TGTGCTGATC
AAGTGTGAAG AAGCCATTGG TTATGACGCC ATTGACAAGC AACCTGTGGA CATTCTGTTT
GCCTTGCTGG TGCCGTCGGA CCAGTGTCAG CAACATCTCA GCACCCTGGC CGCTATGGCC
GAAAAGCTGA ATGACAAGCA GATCCTCAAG CAGCTGCGTA AAAGCCACGA TGAAAAGGAA
CTTTACCAGG TAATCATCGG ATGA
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| Protein sequence | MELSTILAPE CTSCATPGSK KKVLELISDL AAAQNPSLSS QEIFESLLAR EKMGSTGIGN
GIAIPHGRLG TIDKPLAVLI KCEEAIGYDA IDKQPVDILF ALLVPSDQCQ QHLSTLAAMA
EKLNDKQILK QLRKSHDEKE LYQVIIG
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