| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3088 |
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| Symbol | |
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| ID | 4605335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3663507 |
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| End bp | 3664988 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639782504 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_928960 |
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| Protein GI | 119776220 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.104233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.152595 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCGT CGCTCCAGCT AAAACTGGGA CAACAACTCA CAATGACGCC ACAGTTGCAG
CAGGCCATTC GTCTGCTTCA ACTCTCTTCG CTTGAACTGC AACAGGAAAT TCAGCAAGCC
CTCGACGCCA ACCCACTGTT GGAGCTGGAC GACGAACTGG GCAGCGATCA GTTTGATGCC
GACGGCGGCG ATAAAGAATT TGATGACCAG TTCAGCCAGG AGTCCGTCTC AAACGACACC
ACGGACAGTG CCTCGCTGGA AACCTCAGAC GCCATCAATC AGCAGTCCAT GCCGGACGAG
CTCCCGATGG ATACCACCTG GGATGAAGTC TTTACGGCTG CCCCCGTGTC TGGCCCCGGG
ATCCGTGGCG AAGATGATAT GCCGTTTCAG GGCGAAACCA GCGAAGGCCT CTACGAACAT
CTCGAATGGC AAAAAAATCT CACCCCTTTT TCCGATACCG ATCTGGCCAT TGCCACTGCC
ATCATAGATG CCATCGATGA CAAAGGTTAC TTGACCCAAA GCCTGGAGGA AATTCTCGAG
GCCGTGGGCG ATGACGAAGT GGAGCTTGAC GAAGTTGAGG CCGTGCTCAA ACGCATTCAA
CACTTCGACC CAATCGGGGT GGCTGCCCGT GATTTGGCAG AGTGCCTGCT CATTCAACTT
GGGCAGTTTC CGGCGGATAC CCCCCACCTG GACAACGCCA AGCTGCTTAT CCGTGACCAT
TTGGACTTGA TTGCCAACCG CGACTTCCGC ACCCTGATGC GAAAAACACG CCTCAAGGAA
GAAGAACTCA GAGACGCAAT CGTCCTTATT CAGGGGCTGA ATCCCCGTCC CGGTGAGTCG
GTGACCAGCA CCAAGGACGA GTATGTTATT CCGGATGTCT CGGTCAGTAA AAAAAATGGC
CGTTGGGTTG TAGAGCTTAA TCCCGATTGT ATGCCTAAAC TGAGTGTGAA CCAGCAATAT
GCCGCCATGG CGCGCACCAG TCGCAACCAG GCTGACAGCC AGTTTATCCG CGGGCATTTG
CAAGAGGCCA AGTGGTTTAT CAAGAGCCTG GAGAGCCGCA ACGACACCCT GCTGAAAGTC
GCCAATTGCA TAGTGCAGTT CCAGCAGGGC TTTTTTGAGT ATGGTGAAGA AGCCATGAAA
CCCATGGTGC TCAACGATAT CGCCGAAGCG GTAGAGATGC ACGAATCCAC CATCTCACGG
GTCACTACCC AAAAATACAT GCATACCCCA AGGGGTATCT TTGAACTCAA GTATTTTTTC
TCCAGCCACG TCGGGACCGA AGATGGCGGA GAATGCTCAT CTACTGCCAT CCGCGCCTTT
ATCAAGAAAC TGGTGGCAGC AGAAAATCAG AAGAAACCAT TGAGCGACAG CAAAATGGCG
GAACTTCTGG CAGAACAAGG AATCAACGTT GCTAGACGCA CCATCGCCAA ATACCGAGAG
GCGATGTTGA TCCCACCGTC AAACCAACGT AAGAGTTTAT AA
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| Protein sequence | MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDANPLLELD DELGSDQFDA
DGGDKEFDDQ FSQESVSNDT TDSASLETSD AINQQSMPDE LPMDTTWDEV FTAAPVSGPG
IRGEDDMPFQ GETSEGLYEH LEWQKNLTPF SDTDLAIATA IIDAIDDKGY LTQSLEEILE
AVGDDEVELD EVEAVLKRIQ HFDPIGVAAR DLAECLLIQL GQFPADTPHL DNAKLLIRDH
LDLIANRDFR TLMRKTRLKE EELRDAIVLI QGLNPRPGES VTSTKDEYVI PDVSVSKKNG
RWVVELNPDC MPKLSVNQQY AAMARTSRNQ ADSQFIRGHL QEAKWFIKSL ESRNDTLLKV
ANCIVQFQQG FFEYGEEAMK PMVLNDIAEA VEMHESTISR VTTQKYMHTP RGIFELKYFF
SSHVGTEDGG ECSSTAIRAF IKKLVAAENQ KKPLSDSKMA ELLAEQGINV ARRTIAKYRE
AMLIPPSNQR KSL
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