| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3079 |
|---|
| Symbol | |
|---|
| ID | 4605326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3656766 |
|---|
| End bp | 3657236 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639782495 |
|---|
| Product | mce-related protein |
|---|
| Protein accession | YP_928951 |
|---|
| Protein GI | 119776211 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.185697 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTCAC GGAAAGTTGA GATTTGGGTT GGTTTGTTCC TGCTTGCGGG CATCGCCGCC
TTTTTGGTGT TGGTCTTTAA GGTGGCTAAT GTTGAGGTGC AGGCGGGAAA CAGCAGCTAC
ACCCTCTATG CCAGATTTGC CAATGTGGGC GGTCTGAAGG TGCGTTCGCC GGTGAAGGTT
GGCGGTGTGG TCGTGGGGCG GGTCAGTAAG ATTGAACTCG ACCCCGAGCG GCTGGTTGCT
GTGGTCAGTC TGTCCATGGA CGGCCGCTAT CGCAATTTTC CGGAAACCAG CAGCCTGTCT
ATCCTCACAT CCGGCTTGCT GGGTGAGCAA TTCCTGGGCT TAACCCCAGG GTTTGTCGAT
GACGATATTG CCATGTTGAA AGACGGAGAC CGGATTGCTG ATACCAAGTC GGCGCTGGTA
TTGGAAGATC TGATAGGGCA ATTCCTTTAC AGCATGGGTT CCAAGGATTA A
|
|---|
| Protein sequence | MLSRKVEIWV GLFLLAGIAA FLVLVFKVAN VEVQAGNSSY TLYARFANVG GLKVRSPVKV
GGVVVGRVSK IELDPERLVA VVSLSMDGRY RNFPETSSLS ILTSGLLGEQ FLGLTPGFVD
DDIAMLKDGD RIADTKSALV LEDLIGQFLY SMGSKD
|
|---|
| |