| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3074 |
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| Symbol | |
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| ID | 4605321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3652836 |
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| End bp | 3653906 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639782490 |
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| Product | protease DegS |
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| Protein accession | YP_928946 |
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| Protein GI | 119776206 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.940129 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.195971 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGCG CTTTACTCTA TTTAGGCAAA GCCGTGCTCT TTGGCTTAGT GATGGCCGCC
GTGTTTCTTC TCGCGCAAAA CTACCTGGGT AACGACCATG GCAACCTGTT CCGGGATCGT
GGCAATGGTG GCAGCGAACT TTCTTTTGCC AAGGCGGTCA GACGTGCCGC ACCCGCGGTC
GCCAACATAT ACAACATCAG CATAGATCAG CGCCAACCGC TCAACAGTGG CGCACTCCAG
GGGCTTGGCT CGGGGGTGAT CATCAGCAAG GAAGGCTACA TACTCACCAA CTACCACGTT
ATCAAGAAGG CAGATGAAAT TGTCATCGCC CTGCAGGATG GCCGGCGTTT CAGCGCCGAA
GTGGTTGGCT CGGATCCGGA AACAGACCTG AGCGTACTCA AAATTGAAGG GGATAAGCTG
CCTGTGGTGC CACTTAACCT CACCACCCCG CCCCAGGTAG GTGACGTGGT GCTGGCCATC
GGCAATCCCT ATAACCTGGG TCAAACCATT ACCCAGGGCA TTATCAGTGC CACAGGTCGT
AACGGTTTGA GCTCCGGTTA TCAGGACTTC CTGCAGACCG ATGCGGCCAT TAACGCGGGC
AACTCGGGTG GTGCCCTGAT AGATACCAAT GGCGATGTGA TAGGCATCAA CACCGCCGCC
TACCAGATAG GTGATGAAGG CGGTGGACAC GGCATCAGCT TTGCGATTCC CATCCGCCTC
GCCTACTCCA TCATGGGTAA ACTCATCGAA CACGGCCGGG TGATCCGCGG TGCCCTTGGG
ATTTCCGGCG AGGCGCTGAC ACCCTTTATG GCGCAGGTGC TAAAAATGCA GGAAGTTCGC
GGCGTACTGG TGACAGGCGT GGATCGCAAC GGACCGGCAG CCGATGCCCA GATGCAACCC
AGGGATGTGA TTATTGAATA TGGCGGTGAA AGTGTGGTCA GTGCTGAAAT GCTGATGGAC
CGCATTGCAG AAACCAAACC CGGTACCGAA GTGCAGATGA CCATCATTCG CCAGGGCAAG
GCTTACACCT TACCCGTGAT TATCGGCGAG AAGGCAACCG AGTATAACTA A
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| Protein sequence | MKSALLYLGK AVLFGLVMAA VFLLAQNYLG NDHGNLFRDR GNGGSELSFA KAVRRAAPAV
ANIYNISIDQ RQPLNSGALQ GLGSGVIISK EGYILTNYHV IKKADEIVIA LQDGRRFSAE
VVGSDPETDL SVLKIEGDKL PVVPLNLTTP PQVGDVVLAI GNPYNLGQTI TQGIISATGR
NGLSSGYQDF LQTDAAINAG NSGGALIDTN GDVIGINTAA YQIGDEGGGH GISFAIPIRL
AYSIMGKLIE HGRVIRGALG ISGEALTPFM AQVLKMQEVR GVLVTGVDRN GPAADAQMQP
RDVIIEYGGE SVVSAEMLMD RIAETKPGTE VQMTIIRQGK AYTLPVIIGE KATEYN
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