| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3073 |
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| Symbol | |
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| ID | 4605320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3651391 |
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| End bp | 3652740 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639782489 |
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| Product | serine protease |
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| Protein accession | YP_928945 |
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| Protein GI | 119776205 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0102381 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.200966 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAA AACTCTCCCT CGTATCCGCC GCTATTTTAG GTGCAACCCT GACCCTTGGC
ACCCTGCCCG CTTATGCCTC TTTGCCGGTA GCCGTTGACG GACAGCAGCT GCCAAGCCTT
GCGCCCATGT TGGAAAAAAC CACTCCGGCT GTGGTCTCGG TTGCTGTGTC GGGTACCCAT
GTCTCCAAGC AGCGGGTCCC CGATGTATTC CGCTATTTTT TTGGTCCCAA CGCGCCTCAG
GAGCAGGTTC GTGAACGCCC CTTTCGCGGA CTGGGCTCGG GCGTCATTAT CGATGCAGAC
AAGGGCTATA TAGTCACCAA CAACCACGTT ATTGATGGCG CAGACACCAT ACAGATTGGT
TTGCTCGATG GGCGCGAATT TGAAGCCAAG CTCATCGGCA GCGACAGTGA ATCCGATATT
GCGTTGCTGC AAATCAAGGC GGATAAACTG ACCGAGATTA AGTCGGCCGA CTCAGATGCC
ATCCACGTGG GCGACTTCGC CGTAGCCATA GGCAACCCCT TTGGTCTGGG CCAAACAGTG
ACCTCAGGCA TAGTCTCTGC CTTGGGCCGC AGTGGTCTGG GTATCGAGAT GCTGGAAAAC
TTTATCCAAA CCGACGCGGC TATCAATAGC GGTAACTCAG GCGGCGCACT GGTGAATCTT
CGTGGCGAGC TGATTGGTAT CAATACCGCC ATCGTTGCTC CCGGCGGCGG CAACGTGGGT
ATAGGTTTTG CCATTCCCGC CAACATGATG CATTCACTGG TGGATCAGAT TATCGAACAT
GGTGAAGTGC GCCGCGGTGT ACTCGGCATC TCCGGACGTG AGCTCGACAG TAAACTGGCC
GAAGGCTTTG GTCTGGACTC CCAGCACGGT GCCTTTGTGA ATGAAGTCAT GCCAGACAGC
GCAGCCGACG ACGCTGGCAT CAAAGCCGGT GACATCATCA TCAGCGTTGA TGGCCGTAAG
ATTAAGAGCT TCCAGGAACT GCGCGCCAAA ATAGGCACTC TGGGCGCCGG TGCCAAGGTG
GAACTGGGCA TCATCCGCGA CGGCAAAAAC AAGACAGTGA AGGTCACGTT GGGCGAAGCG
TCCAATCAAA CAGCCTCCGC TGATGAGTTG CACCCTCAGC TGGCCGGTGC AAATCTCGAA
AGCACCTCCA AAGGGGTTGA AATCATGGAA GTACAGGAAG GCTCCCCTGC CGCTCTGAGC
GGTCTGCGCA AGGGTGATAT CATAGTGGGT GTCAATCGCA CTGCCGTGAA AGACCTGAAA
GAGCTCAGAG AGCAACTGAA AGAACAGGAT GGCGCTGCCG CCCTGAAAGT ACTGCGAGGA
AAGAGCATCC GTTATCTCGT ACTGAGATAA
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| Protein sequence | MKAKLSLVSA AILGATLTLG TLPAYASLPV AVDGQQLPSL APMLEKTTPA VVSVAVSGTH
VSKQRVPDVF RYFFGPNAPQ EQVRERPFRG LGSGVIIDAD KGYIVTNNHV IDGADTIQIG
LLDGREFEAK LIGSDSESDI ALLQIKADKL TEIKSADSDA IHVGDFAVAI GNPFGLGQTV
TSGIVSALGR SGLGIEMLEN FIQTDAAINS GNSGGALVNL RGELIGINTA IVAPGGGNVG
IGFAIPANMM HSLVDQIIEH GEVRRGVLGI SGRELDSKLA EGFGLDSQHG AFVNEVMPDS
AADDAGIKAG DIIISVDGRK IKSFQELRAK IGTLGAGAKV ELGIIRDGKN KTVKVTLGEA
SNQTASADEL HPQLAGANLE STSKGVEIME VQEGSPAALS GLRKGDIIVG VNRTAVKDLK
ELREQLKEQD GAAALKVLRG KSIRYLVLR
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