| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3068 |
|---|
| Symbol | |
|---|
| ID | 4605315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3646547 |
|---|
| End bp | 3647161 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639782484 |
|---|
| Product | sodium-type flagellar protein MotX |
|---|
| Protein accession | YP_928940 |
|---|
| Protein GI | 119776200 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.214299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.11596 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGCC TTTTCTCAGT CTTGTTAATG CTCGTCTCGC CCGCTCTGAT GGCTACCGAG
GCTGTAGATG TCTACACTCA GGAGCAATTG CTGTCACTCA TTCGTTCTGA GCAGCATCTG
GTCCGGGTCA AACAGGACGA CTGCCAATTG GTGCAGGACA TCGAGGCTCA TGCCGAGGTG
CTCAAGCAGC CCCTCTATCA ATTTTTATGG GGCGAGATGT TTATCCATGG GGTATGCATC
AAAAAGGATG TGCCCCGTGG GCTGCAGTTG CTCAAAGATG CCGCAGGGCA GGGCAGCACA
GAAGCCATGT TGCAGGTGGC CCGCTATTAT GAAGATGGCA AGTATGTGCT AAAAAATAAG
CACAGGTCGG TACAATACCT GTACCCCGCC GCCGCCAACG GCGACCAAAA GGCGCGCATG
ATGCTGGTGC GTCTTTACAA CGAAGGATTT GGCAGTCCAA GAGACTATGA GATGGCCTAC
CATTGGCTGT ACAACGAGGC ATTTAATGAT CAAAAAACTA AAGATCAAGC CTGGGGACTG
CTGCAAAAAC TCGAATCTAT GATGCCCGCC AGTGCCGTGG CCAGAGCCCG GGGTGAGCAT
CTTTGGAATT ACTGA
|
|---|
| Protein sequence | MLRLFSVLLM LVSPALMATE AVDVYTQEQL LSLIRSEQHL VRVKQDDCQL VQDIEAHAEV
LKQPLYQFLW GEMFIHGVCI KKDVPRGLQL LKDAAGQGST EAMLQVARYY EDGKYVLKNK
HRSVQYLYPA AANGDQKARM MLVRLYNEGF GSPRDYEMAY HWLYNEAFND QKTKDQAWGL
LQKLESMMPA SAVARARGEH LWNY
|
|---|
| |