| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3048 |
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| Symbol | tolC |
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| ID | 4605295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3625719 |
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| End bp | 3627017 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639782464 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_928920 |
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| Protein GI | 119776180 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000973822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCA AGTTCAGCTC TCTGTGTGCC GCCATCGCTC TGGCAGCCAG TGCATCCAGC
GTTCAAGCCG ACGACTTGCT GCAAATCTAT CAGCAAGCTC TGACCAATGA CCCTCTGGTG
CTGCAGGCTC AGGCTCAGCG AAATGCGTTA TACGCGCAAA TCGAAGAAAA CCGCGCTCCC
CTGCTGCCCA CCATCAGTGC CAATGTCGGT TACGATAAGG CCTGGAAAGA CCCATCCGAA
GACTCCGATG GCTTTACCGG TGGCGTCAAA TTAACTCAGG TGATTTATGA CCACAGCGCC
TGGGTTGGCC TGTCGCTGGC AGAAAAAGCC GCAGCGCAAG CCGATGCCGC CTATGCATCC
GCACTGCAAA ACCTCATCAC CCGTGTGACC AAGGCCTACT TTGACGTGCT CAAGGCCAAG
GATAACTATG AGTTCCAGGG CGCCGAGAAG CGCGCTATCG AGCGCCAGCT TGAGCAGACC
AAACAGCGTT TTGCCGTAGG TTTGACCGCC ATGACGGATG TACACGAAGC ACAGGCGCAA
TATGACCTGG CTTCAGCCAC CGAAATTCTG GCTGAAAATA CCCTGTCAAA CAGCTATGAG
GCGCTGCGTG AAATCACAGG TATCGACCAT AAGTCTATCA ACGTTCTGGA CACCAATCGT
TTCAGTGCTG CCGCCCCAGC GCCTGCCGCT CCCAATGAGT GGATCAAGAT GGCAGAGAAC
AACAGTACAG ACCTGCTGAC TCAGCGCATT GGTAAAGACA TCGCCGAAGA GACCATTTCC
CTCTACAAAG CGGGTCACTA CCCATCGTTA AGCTTGAGCG CAGGTTACAC CAAGGGCTTT
GAGCAGACCC CTGGTCCTGA CTATGACAAC AGCTCTATCG GCGTGACTCT GTCTATCCCT
ATCTTTGAAG GCTTCAAAGT TACCTCCAAA GTAGAACAGG CCCAGTATAA GTATGTGGAA
GCCAGTGAGA AGCTAGAGCA GACTTATCGC CGCGTGGTGA AGGATGTACG TAACAACTTC
AACAACGTTG GTGCCTCCAT AAGCTCTATC CGTGCTTACG AGCAATCCGT GCTGTCTTCA
GAAAGTGCGC TCGGTGCCAC TCAGTCTGGT TTCGAAGTGG GCACCCGTAC CATAGTTGAC
GTGCTCAACC GTACCCGTGA CCTCTACGAC TCCAAACGTA AGCTGTCTGA CGCGCGTTAC
AGCTACATCA GCTCGGTGCT GGCCCTGAAG CAAGCCGCAG GCACCCTGAA CGAAGATGAT
GTGATTGCCA TCAACAACGG TTTGAAGGCT GCAGAGTAA
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| Protein sequence | MKFKFSSLCA AIALAASASS VQADDLLQIY QQALTNDPLV LQAQAQRNAL YAQIEENRAP
LLPTISANVG YDKAWKDPSE DSDGFTGGVK LTQVIYDHSA WVGLSLAEKA AAQADAAYAS
ALQNLITRVT KAYFDVLKAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA MTDVHEAQAQ
YDLASATEIL AENTLSNSYE ALREITGIDH KSINVLDTNR FSAAAPAPAA PNEWIKMAEN
NSTDLLTQRI GKDIAEETIS LYKAGHYPSL SLSAGYTKGF EQTPGPDYDN SSIGVTLSIP
IFEGFKVTSK VEQAQYKYVE ASEKLEQTYR RVVKDVRNNF NNVGASISSI RAYEQSVLSS
ESALGATQSG FEVGTRTIVD VLNRTRDLYD SKRKLSDARY SYISSVLALK QAAGTLNEDD
VIAINNGLKA AE
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