| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3045 |
|---|
| Symbol | |
|---|
| ID | 4605292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3623581 |
|---|
| End bp | 3624420 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639782461 |
|---|
| Product | lacZ expression regulator |
|---|
| Protein accession | YP_928917 |
|---|
| Protein GI | 119776177 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1409] Predicted phosphohydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.396256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGAAAG AGGCTGTTGA ATATTCGTTG GCAGAAGGGG AAGCTGCGCG TCTGGTGCAG
ATCACCGATC CACATTTATT TGCCAGCAAC GACGGACAAC TGCTGGGCGT GAACACCAGT
CAGAGCCTGG CGGCTGTGCT CAATACCCTG AATGCCACCC ATTATCCCGC GCACCTGATG
CTCGCCACCG GTGACATCAG TCAGGATTAC ACTCCGGATT CTTACCGTAA CTTCGTTCAG
GCCATCGAAT TTCTTGGTCT ACCTTGCCAT TATTTGCCCG GAAACCATGA CGATCCAAGG
GTCATGAACC TGCATATGCA GGGTCCCAGG GTCTTCGGGC AGCAGCGAAT TCTGATTGGG
AACTGGCATA TTCTGATGCT GGACAGTACC GTGCGGGGAA AGCCCGGAGG CCATATGGGG
GAGCTGCAAT TCTCCCTCAT CGACCAGGCC ATCGCAGCAT ACCCGAACCA CCATACGCTG
CTTGTGATGC ACCATAATCC CATTCTGATG GATTGCGCCT GGCTCGATCA GCACTGTATG
GATAACGGCA GTGACTTTCT CGCCAGGGTG TCTGCATACC CTCAGGTGAA GGGCATTCTC
TGGGGCCATG TGCATCAGGC CGTGGATGAA GTGTATGCCA CGGCCAATGG CCAGCTACCA
CTGATGGCCA CCCCATCTAC CTGTATTCAA TTCAAACCCA AGTCACCTTA CTTTGCCCTC
GATCATCTGC AGCCTGGCTA CCGTTTGCTG GAGCTTTTGA GCGATGGTAG CATTCATACA
CATGTTTACC GTGTGCCGGG TAATCGCTTT GCGCCGGACC ACAGCTCCAG CGGTTACTGA
|
|---|
| Protein sequence | MLKEAVEYSL AEGEAARLVQ ITDPHLFASN DGQLLGVNTS QSLAAVLNTL NATHYPAHLM
LATGDISQDY TPDSYRNFVQ AIEFLGLPCH YLPGNHDDPR VMNLHMQGPR VFGQQRILIG
NWHILMLDST VRGKPGGHMG ELQFSLIDQA IAAYPNHHTL LVMHHNPILM DCAWLDQHCM
DNGSDFLARV SAYPQVKGIL WGHVHQAVDE VYATANGQLP LMATPSTCIQ FKPKSPYFAL
DHLQPGYRLL ELLSDGSIHT HVYRVPGNRF APDHSSSGY
|
|---|
| |