| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3030 |
|---|
| Symbol | |
|---|
| ID | 4605277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3604771 |
|---|
| End bp | 3606261 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639782441 |
|---|
| Product | YjeF protein |
|---|
| Protein accession | YP_928902 |
|---|
| Protein GI | 119776162 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase |
|---|
| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATT CTTGCCTGTC CTTGCCTCAA ACACTGTATT CGGCCGCCCA GGTGAAGGCT
GCTGAAGTCA ATGCAGTCAA TTCAGGGGCT TGTAGCCTGT ACGAGCTGGT CGAGCAGGCT
GGCAGTGCTG CTATGGCGAT TTTAGAGTCG TCCGAGCACT GTAATCTCCC CACAGTGATT
TTGGTGGGCA AGGGGAATAA TGGCGCTGAT GCGCTGGTGG TCGCCAGGTT GCTGCTGACC
AAGGGCAATC GTGCCCGGGT GCTGCTGCTT GGGCAAGGCA AAACCCAGGA ATATGTCACA
GCCATGGCCG CCTTTGTCGA GGCTGGTGGT GTCTCAGAAG CATTTACCGA ATCTGCCCTG
GAAGGTGCTG ACGTCATCAT TGATGGGGTA CTGGGTACCG GAAGCTGCGG CGAACTGAGC
GATGACTTGC AGCAGTGTTT CAACGCGGTA AACGCGACGC CAGCCTGGGT GCTCAGCCTG
GATATGCCTT CCGGTGTGAA TGCGGATACC GGCAACGTGA ATCCGGTTGC GATTCAAGCC
GATGTCACCC TGTGTTTTGG CGGGCTAAAG CAAGGGTTGT TTACTTCCAG AGCACGGCAT
TTTGCTGGGC TTATTCGCTA CGCATCCCTC GGACTTACTG ATTTTCTCGC CCAGCTCCCG
GCAGAGGCCC TGCGGGTTGA TGCAGGGTAT CTGAAGGATC TGCTCGGACG TCGTCCACGC
GACAGCCACA AGGGGAAATC CGGCAAGGTT ACCATCATGG GGGGCAACTA TGGCATGGCC
GGTGCTGTGC GGTTGGCTGG GGAGGCCTGT CTTCGCGCCG GTGCGGGGTT GGTAACGGTT
ATCAGCCGAC CGGAACATCA GCTGACCGTG AATGCCAACC GGCCAGAGCT GATGTTTTGG
GGGTGCGAAT TGGTGGACAT GGAGGTGTAT CTGCGTTTGG GTTGGGCTGA TGTGCTGGTG
CTTGGCCCCG GCCTTGGCAA GGATGACTGG GGATATAACC TGTACAAGGC GGTTGGTTTA
TCGGATAAAC CCTGTGTGCT CGATGCCGAT GCGCTGAACC TGTTATCAAA AGAGCCCTGT
CGTCAGGTCA ATCGCGTTTT GACGCCCCAC CCCGGCGAAG CGGCAAGGCT GCTGGGGGTG
TCCACTGCCC AGATAGAGGT CGACAGGTTT GCTGCTGTCA GGCAGTTACA GGAGAGATTC
GGGGGCGTTG TCTTGCTCAA AGGTGCAGGT ACGCTTATCT ATGACGGCGA TAGTCTGGTG
GTGGCTCCCG TTGGCAACCC GGGCCTGGCC AGTGGTGGGT GCGGAGATGT TTTATCTGGT
ATAATCGCCG CCCTTATGGC TCAGGGGCTC GATACCATGA CGGCGACTAT CGCTGGTGTG
GTGGTCCACG GTGAGGCGGC AGACCTCGCA GCACTCGCCG GGGAGCGGGG CATGCTCGCC
AGTGACCTGA TGCCTTTTAT TCGCCAATTG GTCAATAGTG ATTTAATCTA G
|
|---|
| Protein sequence | MSDSCLSLPQ TLYSAAQVKA AEVNAVNSGA CSLYELVEQA GSAAMAILES SEHCNLPTVI
LVGKGNNGAD ALVVARLLLT KGNRARVLLL GQGKTQEYVT AMAAFVEAGG VSEAFTESAL
EGADVIIDGV LGTGSCGELS DDLQQCFNAV NATPAWVLSL DMPSGVNADT GNVNPVAIQA
DVTLCFGGLK QGLFTSRARH FAGLIRYASL GLTDFLAQLP AEALRVDAGY LKDLLGRRPR
DSHKGKSGKV TIMGGNYGMA GAVRLAGEAC LRAGAGLVTV ISRPEHQLTV NANRPELMFW
GCELVDMEVY LRLGWADVLV LGPGLGKDDW GYNLYKAVGL SDKPCVLDAD ALNLLSKEPC
RQVNRVLTPH PGEAARLLGV STAQIEVDRF AAVRQLQERF GGVVLLKGAG TLIYDGDSLV
VAPVGNPGLA SGGCGDVLSG IIAALMAQGL DTMTATIAGV VVHGEAADLA ALAGERGMLA
SDLMPFIRQL VNSDLI
|
|---|
| |