| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3029 |
|---|
| Symbol | |
|---|
| ID | 4605276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3604243 |
|---|
| End bp | 3604704 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639782440 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_928901 |
|---|
| Protein GI | 119776161 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0802] Predicted ATPase or kinase |
|---|
| TIGRFAM ID | [TIGR00150] ATPase, YjeE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.63375 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACG TTAAGATTTT TCTCGAGACC GACGAGCAAA CCATTGCCAT CGGTCAACAA
CTCGCAAAAC ATATCCATCC CCCGCTAACG CTGTACCTCA CCGGTGAACT GGGTGCGGGT
AAAACGACGC TCAGCCGCGG CATTATTCAG GCACTTGGGC ATCAGGGCGC GGTGAAAAGC
CCAACTTATA CCCTGGTGGA ACCTTACGAG CTTGAGAATG TCGAAATTTA CCATTTCGAC
CTTTATCGTC TCTCAGACCC CGAAGAGTTG GAGTTTATGG GGATCAGAGA TTATTTTTCC
GACAAAAGCC TTTGTATAGT AGAGTGGCCT GACAGAGGGT TCGGCTTATT GCCTGAAGCC
GATTTACACC TGCATTTGGT ATATGCGGGC ACTGGACGAG AGCTCAGTAT CCAGGCTGGT
TCTGCAGCCG GAAGAGCAGT GATAGAAAAT CTCAGCGAAT GA
|
|---|
| Protein sequence | MTDVKIFLET DEQTIAIGQQ LAKHIHPPLT LYLTGELGAG KTTLSRGIIQ ALGHQGAVKS
PTYTLVEPYE LENVEIYHFD LYRLSDPEEL EFMGIRDYFS DKSLCIVEWP DRGFGLLPEA
DLHLHLVYAG TGRELSIQAG SAAGRAVIEN LSE
|
|---|
| |