Gene Sama_3028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3028 
Symbol 
ID4605275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3602939 
End bp3604246 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content53% 
IMG OID639782439 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_928900 
Protein GI119776160 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0809739 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAGAA TAATAAGCAG ACTTTTTTTC GTTTTAACCC TGCTGTTTTC CGTTGGCGCC 
TTAGCTGCGA ATCAGCTGGA TGGTGTCAGG ATATGGGCCG CACCGGAATC GACCCGGGTA
GTGTTTGATC TCACTGCCAA ACCCAGTTAC ACCCATTCTA CTCTGGTGGG CCCGGACCGA
CTGGTGTTGG ATTTGAGCGA TACCCAATCC AAGGTGGCGC TCGGCAAAAT CGCCAATAAT
TCCAAGTTGG TGAAGCGGGT TCGCCTGAGC AAACCGCCTG CCAAAGGTAT TCTGCGGCTC
GTTATCGACC TTAACCGGCC GGTGAATGCC AACCTGTTTT CGTTACCGCC AACGGCCCCC
TATGGCAACC GTCTTGTGGT AGACCTTGAA GAAAAAACAA GTGAAAGCAA GGCGATAGTA
GCACCGCCTT CGTCTTTGCG TGACATTATC GTTGCCATTG ATGCAGGACA CGGCGGTGAC
GACCCGGGCT CTATCGGCCC CTCAGGTCTG TATGAGAAAA AAATCGCCTT TGAAATTGCC
AAACGGGTGC AGGCCAAGAT AGATGCCACC CCGGGTATGA AAGCGGTATT AACCCGTACC
GGTGATTACT ACATTCATCC GAACAAGCGC TCGGAGCTGG CCCGCAAACA CCGCGCCGAT
CTGCTGGTAT CCATTCACGC CGATGCGTTC ACGTCGCCCA ATCCACGCGG TGCGTCAGTG
TGGGTGCTGT CTATGCGCCG AGCCAACAGC GAAATTGGTC GCTGGCTTGA GCAAAAAGAA
AAGCACTCAG AGCTTTTGGG GGGGGCCGGT GAAATTATTC AGAATGCCGA TAACGAGCAG
TATCTGGCCA TGACATTGCT GGATATGTCC ATGGACAGAT CCATGGCTAT CAGTCACAGC
ATTGCGGGCG ATGTGCTCAA AGAGCTGGGC AAGGTGACAG ACCTGCATAA GAACTTGCCC
GAATCAGCGA GCTTGGCAGC GCTGAAATCC CCAGATATAC CCTCTATTCT GGTGGAGACC
GGATTTATCT CTAACCCCAA AGAGGAAAGC CTGCTAAAGA GCAGTTCACA TCAGGAACGC
CTTGCCAAAG CGATACACAC GGGTGTGCTG AGGTATTTTG AGACCAACCC GCCCAGTGAC
TCGCTTATCG CCAGCCGCGC CAACAGCCAG CACAAGGTCA GTCGCGGCGA GTCTTTATCT
GTGATTGCAG CCCAATATGG CATTTCTGTC ATCAGTCTCA AACAGGCGAA TAACCTTAAG
TCCGACACCC TGCGTGTGGG CCAAAAGCTG GTGATCCCCA AAGGATAA
 
Protein sequence
MNRIISRLFF VLTLLFSVGA LAANQLDGVR IWAAPESTRV VFDLTAKPSY THSTLVGPDR 
LVLDLSDTQS KVALGKIANN SKLVKRVRLS KPPAKGILRL VIDLNRPVNA NLFSLPPTAP
YGNRLVVDLE EKTSESKAIV APPSSLRDII VAIDAGHGGD DPGSIGPSGL YEKKIAFEIA
KRVQAKIDAT PGMKAVLTRT GDYYIHPNKR SELARKHRAD LLVSIHADAF TSPNPRGASV
WVLSMRRANS EIGRWLEQKE KHSELLGGAG EIIQNADNEQ YLAMTLLDMS MDRSMAISHS
IAGDVLKELG KVTDLHKNLP ESASLAALKS PDIPSILVET GFISNPKEES LLKSSSHQER
LAKAIHTGVL RYFETNPPSD SLIASRANSQ HKVSRGESLS VIAAQYGISV ISLKQANNLK
SDTLRVGQKL VIPKG