Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3028 |
Symbol | |
ID | 4605275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3602939 |
End bp | 3604246 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639782439 |
Product | N-acetylmuramoyl-L-alanine amidase |
Protein accession | YP_928900 |
Protein GI | 119776160 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0809739 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAGAA TAATAAGCAG ACTTTTTTTC GTTTTAACCC TGCTGTTTTC CGTTGGCGCC TTAGCTGCGA ATCAGCTGGA TGGTGTCAGG ATATGGGCCG CACCGGAATC GACCCGGGTA GTGTTTGATC TCACTGCCAA ACCCAGTTAC ACCCATTCTA CTCTGGTGGG CCCGGACCGA CTGGTGTTGG ATTTGAGCGA TACCCAATCC AAGGTGGCGC TCGGCAAAAT CGCCAATAAT TCCAAGTTGG TGAAGCGGGT TCGCCTGAGC AAACCGCCTG CCAAAGGTAT TCTGCGGCTC GTTATCGACC TTAACCGGCC GGTGAATGCC AACCTGTTTT CGTTACCGCC AACGGCCCCC TATGGCAACC GTCTTGTGGT AGACCTTGAA GAAAAAACAA GTGAAAGCAA GGCGATAGTA GCACCGCCTT CGTCTTTGCG TGACATTATC GTTGCCATTG ATGCAGGACA CGGCGGTGAC GACCCGGGCT CTATCGGCCC CTCAGGTCTG TATGAGAAAA AAATCGCCTT TGAAATTGCC AAACGGGTGC AGGCCAAGAT AGATGCCACC CCGGGTATGA AAGCGGTATT AACCCGTACC GGTGATTACT ACATTCATCC GAACAAGCGC TCGGAGCTGG CCCGCAAACA CCGCGCCGAT CTGCTGGTAT CCATTCACGC CGATGCGTTC ACGTCGCCCA ATCCACGCGG TGCGTCAGTG TGGGTGCTGT CTATGCGCCG AGCCAACAGC GAAATTGGTC GCTGGCTTGA GCAAAAAGAA AAGCACTCAG AGCTTTTGGG GGGGGCCGGT GAAATTATTC AGAATGCCGA TAACGAGCAG TATCTGGCCA TGACATTGCT GGATATGTCC ATGGACAGAT CCATGGCTAT CAGTCACAGC ATTGCGGGCG ATGTGCTCAA AGAGCTGGGC AAGGTGACAG ACCTGCATAA GAACTTGCCC GAATCAGCGA GCTTGGCAGC GCTGAAATCC CCAGATATAC CCTCTATTCT GGTGGAGACC GGATTTATCT CTAACCCCAA AGAGGAAAGC CTGCTAAAGA GCAGTTCACA TCAGGAACGC CTTGCCAAAG CGATACACAC GGGTGTGCTG AGGTATTTTG AGACCAACCC GCCCAGTGAC TCGCTTATCG CCAGCCGCGC CAACAGCCAG CACAAGGTCA GTCGCGGCGA GTCTTTATCT GTGATTGCAG CCCAATATGG CATTTCTGTC ATCAGTCTCA AACAGGCGAA TAACCTTAAG TCCGACACCC TGCGTGTGGG CCAAAAGCTG GTGATCCCCA AAGGATAA
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Protein sequence | MNRIISRLFF VLTLLFSVGA LAANQLDGVR IWAAPESTRV VFDLTAKPSY THSTLVGPDR LVLDLSDTQS KVALGKIANN SKLVKRVRLS KPPAKGILRL VIDLNRPVNA NLFSLPPTAP YGNRLVVDLE EKTSESKAIV APPSSLRDII VAIDAGHGGD DPGSIGPSGL YEKKIAFEIA KRVQAKIDAT PGMKAVLTRT GDYYIHPNKR SELARKHRAD LLVSIHADAF TSPNPRGASV WVLSMRRANS EIGRWLEQKE KHSELLGGAG EIIQNADNEQ YLAMTLLDMS MDRSMAISHS IAGDVLKELG KVTDLHKNLP ESASLAALKS PDIPSILVET GFISNPKEES LLKSSSHQER LAKAIHTGVL RYFETNPPSD SLIASRANSQ HKVSRGESLS VIAAQYGISV ISLKQANNLK SDTLRVGQKL VIPKG
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