Gene Sama_3023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3023 
Symbol 
ID4605270 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3597186 
End bp3598319 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content55% 
IMG OID639782434 
ProducthflK protein 
Protein accessionYP_928895 
Protein GI119776155 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01933] HflK protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000561401 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTGGA ACGAGCCCGG TAACAAGGGG CAGGACCCTT GGGGAAACAA AGGCGGCAAC 
GATAAAGGGC CGCCGGATCT GGACGAAGTC TTTCGCAATA TTTCCAAACG TTTTGGCGGC
AAGGGCAATG GCCTGGGCTT TGGTGGCCTG GGGTTAATTA TCGCGCTTGG TGCTGCTGTA
TGGTTCCTCT CCGGTTTTTA CACCATCAAA ACCGCAGAGC GCGGTGTACA TCTGCGCTTT
GGTGAGTACA TTGGTGAAGT TGGTCCCGGT CTGCGCTGGA AAGCCACCTT TATTGATGAA
GTGTATCCGG TCGATGTGGA AGCCCGTCGT ACCATCCCGG CTTCTGGCAG CATTCTGACT
TCCGATGAGA ACGTGGTGCT GGTCGAGCTG GCTGTGCAGT ACAAGGTGAC TGATGCATAC
CAGTACATGT TCAGTGCTGT GGATGCCAAT TCCTCCCTGC GTGAAGCCAC CGACAGCGCA
CTGCGTTATG TGGTGGGCCA CTCTAAGATG GATGACATTC TCACCACTGG CCGCGACAAA
ATCCGTACCG ATACCTGGGC CGAGCTTGAG CGTATTATTG AGCCTTACAA GCTGGGTCTG
ACCATCATGG ACGTTAACTT CCTGCCGGCA CGTCCGCCGG AAGAAGTGAA AGATGCCTTC
GATGATGCCA TTGCCGCACA GGAAGATGAG CAGCGCTTTA TCCGTGAAGC TGAAGCTTAT
CAGCGTGAAG TTGAGCCCCG TGCCCGTGGT CAGGAACAGC GTATTGCTGA AGATGCCCGC
GCCTACAAAG AGCAGGTGGT TCAGCAGGCA CAGGGTGCCG TTGCACGCTT TGAAAAGCTG
CTGCCTGAAT ACAAGGCAGC GCCTGAGGTG ACTCGCCAGC GCATGTATAT CGAGGCCATG
GAAGAAGTGC TTTCAGGTAA CAACAAGGTG CTTATCGATG CCAAGAACAA CGGTAATCTT
CTGTATCTGC CATTGGATAA GATGATCACG CCTTCTGCTG CTGTGCCCAC GTCAGACGAC
AGTGGTATCA CGTCAACCAC GCATCTGGAT ACCGGCGCCT TACAGCGCAG TACCGGACTG
CCGGTAAGCG GCCGTCCTTC CCGTGAAGAT CGTGTTCGCC AGGGGAGGGA GTAA
 
Protein sequence
MAWNEPGNKG QDPWGNKGGN DKGPPDLDEV FRNISKRFGG KGNGLGFGGL GLIIALGAAV 
WFLSGFYTIK TAERGVHLRF GEYIGEVGPG LRWKATFIDE VYPVDVEARR TIPASGSILT
SDENVVLVEL AVQYKVTDAY QYMFSAVDAN SSLREATDSA LRYVVGHSKM DDILTTGRDK
IRTDTWAELE RIIEPYKLGL TIMDVNFLPA RPPEEVKDAF DDAIAAQEDE QRFIREAEAY
QREVEPRARG QEQRIAEDAR AYKEQVVQQA QGAVARFEKL LPEYKAAPEV TRQRMYIEAM
EEVLSGNNKV LIDAKNNGNL LYLPLDKMIT PSAAVPTSDD SGITSTTHLD TGALQRSTGL
PVSGRPSRED RVRQGRE