| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3020 |
|---|
| Symbol | |
|---|
| ID | 4605267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3594125 |
|---|
| End bp | 3595339 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639782431 |
|---|
| Product | ubiquinol-cytochrome c reductase, cytochrome b |
|---|
| Protein accession | YP_928892 |
|---|
| Protein GI | 119776152 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1290] Cytochrome b subunit of the bc complex |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000159127 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAGA ACATTATCGA TTGGATCGAT GCCCGTATCC CAATGACGGC GACCTATAAT
CGTCATGTTG GTCAGTACGC GACCCCAAAG AACTTTAACT TCTGGTACTT CTTCGGTTCG
CTGGCACTGT TGGTGCTGGT AAACCAGATC CTCACCGGTA TCTGGCTGAC CATGAACTAC
GTACCTACCG CAGAAGGCGC CTTCGCCTCC ATTGAATACA TCATGCGCGA TGTGGAATAT
GGTTGGTTGT TGCGTTATAT GCACTCCACA GGGGCCTCTG CATTCTTCGT GGTGGTATAT
CTGCACATGT TCCGTGGTCT TATCTACGGT TCATACCAGA AACCACGTGA ACTGCTGTGG
CTGTTCGGTA TGCTGATTTT CCTCGTGCTG ATGGCCGAAG CCTTCATGGG CTATCTGCTG
CCATGGGGCC AGATGTCATA CTGGGGTGCG CAGGTAATTA TCTCTCTGTT TGGTGCCATC
CCTGTTATTG GTGATGATCT GACTCTGTGG ATCCGTGGTG ACTACGTGGT ATCAGGCGCG
ACCCTGAACC GCTTCTTCGC CCTGCACGTG ATTGCACTGC CGTTGGTGCT GGTTGTTCTG
GTGTTCCTGC ACCTGATTGC CCTGCACGAA GTGGGTTCAA ACAACCCCGA CGGTATCGAA
ATCAAGAAGA ACAAGGACGA AAACGGCTGG CCCGTTGACG GTATTCCTTT CCACCCTTAC
TACACCGTGA AAGACATCAT GGGTGTGGCG GGCTTCCTGA TAGTGTTCTG CTACGTGTTG
TTCTTCATGC CAGAAGGTGG TGGTTACTTC CTCGAGAAGC CTAACTTCGA AGCTGCTAAC
CCAATGAAGA CCCCTGAGCA CATTGCACCT GTATGGTACT TCACCCCCTT CTACGCGATT
CTGCGTGCGG TTCCGCACAA GCTGGGTGGC GTGATCATGA TGGGTCTGTC GATTGCCGTA
CTGTTCCTGC TGCCATGGCT GGATCGTTGT AAGGTGAAGT CAGTTCGCTA TCGCAGCATG
ATCCACAAGC TGAACATTGC TCAGTTCTCT GTGTCTTTCG TCGTACTGGG CTACCTCGGT
GCCGTGCCAG CTTCACCAGC ACTGACCATT GCTGCTCAAG TGTTCACCAT CACCTATTTT
GGCTTCTTCG TAGCCCTGTG GGTGTACAGC AAGAATGAGA AGACCAAGCC AGTTCCAGCG
AGGTTGACTA AATAA
|
|---|
| Protein sequence | MVKNIIDWID ARIPMTATYN RHVGQYATPK NFNFWYFFGS LALLVLVNQI LTGIWLTMNY
VPTAEGAFAS IEYIMRDVEY GWLLRYMHST GASAFFVVVY LHMFRGLIYG SYQKPRELLW
LFGMLIFLVL MAEAFMGYLL PWGQMSYWGA QVIISLFGAI PVIGDDLTLW IRGDYVVSGA
TLNRFFALHV IALPLVLVVL VFLHLIALHE VGSNNPDGIE IKKNKDENGW PVDGIPFHPY
YTVKDIMGVA GFLIVFCYVL FFMPEGGGYF LEKPNFEAAN PMKTPEHIAP VWYFTPFYAI
LRAVPHKLGG VIMMGLSIAV LFLLPWLDRC KVKSVRYRSM IHKLNIAQFS VSFVVLGYLG
AVPASPALTI AAQVFTITYF GFFVALWVYS KNEKTKPVPA RLTK
|
|---|
| |