Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3020 |
Symbol | |
ID | 4605267 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3594125 |
End bp | 3595339 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639782431 |
Product | ubiquinol-cytochrome c reductase, cytochrome b |
Protein accession | YP_928892 |
Protein GI | 119776152 |
COG category | [C] Energy production and conversion |
COG ID | [COG1290] Cytochrome b subunit of the bc complex |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000159127 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTAAGA ACATTATCGA TTGGATCGAT GCCCGTATCC CAATGACGGC GACCTATAAT CGTCATGTTG GTCAGTACGC GACCCCAAAG AACTTTAACT TCTGGTACTT CTTCGGTTCG CTGGCACTGT TGGTGCTGGT AAACCAGATC CTCACCGGTA TCTGGCTGAC CATGAACTAC GTACCTACCG CAGAAGGCGC CTTCGCCTCC ATTGAATACA TCATGCGCGA TGTGGAATAT GGTTGGTTGT TGCGTTATAT GCACTCCACA GGGGCCTCTG CATTCTTCGT GGTGGTATAT CTGCACATGT TCCGTGGTCT TATCTACGGT TCATACCAGA AACCACGTGA ACTGCTGTGG CTGTTCGGTA TGCTGATTTT CCTCGTGCTG ATGGCCGAAG CCTTCATGGG CTATCTGCTG CCATGGGGCC AGATGTCATA CTGGGGTGCG CAGGTAATTA TCTCTCTGTT TGGTGCCATC CCTGTTATTG GTGATGATCT GACTCTGTGG ATCCGTGGTG ACTACGTGGT ATCAGGCGCG ACCCTGAACC GCTTCTTCGC CCTGCACGTG ATTGCACTGC CGTTGGTGCT GGTTGTTCTG GTGTTCCTGC ACCTGATTGC CCTGCACGAA GTGGGTTCAA ACAACCCCGA CGGTATCGAA ATCAAGAAGA ACAAGGACGA AAACGGCTGG CCCGTTGACG GTATTCCTTT CCACCCTTAC TACACCGTGA AAGACATCAT GGGTGTGGCG GGCTTCCTGA TAGTGTTCTG CTACGTGTTG TTCTTCATGC CAGAAGGTGG TGGTTACTTC CTCGAGAAGC CTAACTTCGA AGCTGCTAAC CCAATGAAGA CCCCTGAGCA CATTGCACCT GTATGGTACT TCACCCCCTT CTACGCGATT CTGCGTGCGG TTCCGCACAA GCTGGGTGGC GTGATCATGA TGGGTCTGTC GATTGCCGTA CTGTTCCTGC TGCCATGGCT GGATCGTTGT AAGGTGAAGT CAGTTCGCTA TCGCAGCATG ATCCACAAGC TGAACATTGC TCAGTTCTCT GTGTCTTTCG TCGTACTGGG CTACCTCGGT GCCGTGCCAG CTTCACCAGC ACTGACCATT GCTGCTCAAG TGTTCACCAT CACCTATTTT GGCTTCTTCG TAGCCCTGTG GGTGTACAGC AAGAATGAGA AGACCAAGCC AGTTCCAGCG AGGTTGACTA AATAA
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Protein sequence | MVKNIIDWID ARIPMTATYN RHVGQYATPK NFNFWYFFGS LALLVLVNQI LTGIWLTMNY VPTAEGAFAS IEYIMRDVEY GWLLRYMHST GASAFFVVVY LHMFRGLIYG SYQKPRELLW LFGMLIFLVL MAEAFMGYLL PWGQMSYWGA QVIISLFGAI PVIGDDLTLW IRGDYVVSGA TLNRFFALHV IALPLVLVVL VFLHLIALHE VGSNNPDGIE IKKNKDENGW PVDGIPFHPY YTVKDIMGVA GFLIVFCYVL FFMPEGGGYF LEKPNFEAAN PMKTPEHIAP VWYFTPFYAI LRAVPHKLGG VIMMGLSIAV LFLLPWLDRC KVKSVRYRSM IHKLNIAQFS VSFVVLGYLG AVPASPALTI AAQVFTITYF GFFVALWVYS KNEKTKPVPA RLTK
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