| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3009 |
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| Symbol | astD |
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| ID | 4605256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3581295 |
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| End bp | 3582755 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639782420 |
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| Product | succinylglutamic semialdehyde dehydrogenase |
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| Protein accession | YP_928881 |
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| Protein GI | 119776141 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR03240] succinylglutamic semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCAAT TTATCAATGG CCAGTGGCTC GCTGGCGAAG GCAAAGAGAT GCAGTCAAAA
AACCCCGCCA ACGGCGAGGT GATTTGGCAG GGTAAGGCCG CTGTGCCTGC TCAGGTACAA
GCGGCTGTGA TGGCGGCCCG CGATGCTCAG TTTGAATGGT TTATGCTGGG CTTTGAAGGC
CGTCAGGCCA TCGTTGAAGC CTACCGCAAT GAACTTGAGG CCAACAAGGC AGAGCTTGCC
GAGGTGATAG CCCAGGAAAC CGGTAAGCCA CGCTGGGAAA CCGCCACCGA GGCCGCTGCC
ATGATTGGCA AAATCGGCTT GTCTGTCAGT GCCTATCACA AGCGTACCGG CACCGAAGTG
AACGAGGGCG CTGCAGGCCG CGCTGTGCTG CGCCATAAGC CCCACGGTGT GGTGGCGGTG
TTTGGTCCCT ACAACTTCCC CGGTCACCTG CCCAACGGTC ACATAGTGCC CGCGCTGCTG
GCGGGCAATA CAGTAGTGTT CAAACCCTCA GAGCTGACGC CAAAAGTGGC CGAGTTGATG
TTGAAGCTAT GGGAGAAGGC TGGCCTGCCA GCCGGTGTTA TCAACCTGGT GCAGGGCGAG
GTGGAAACCG GCAAGGCGCT GGCGTCACAT CCACAGCTCG ACGGCCTTTT CTTCACCGGC
AGCTCCCGCA CCGGTCACTT GCTGCATCAG CAGTATGCCG GGCATCCGGG TAAGATTCTG
GCGCTTGAGA TGGGGGGTAA CAATCCACTC ATCGTTAAAG GTGTGAGCGA TACCCGCGCT
GCCATCCACG ACATCATTCA ATCAGCCTTT ATCTCTTCCG GTCAGCGCTG TACCTGTGCC
CGTCGCCTGT ACGTTGAAAA AGGCGCCGAG GGTGACAAAT TGCTGGCCGG TTTGGTCGAA
GCCGTTAAAG CAATCAAGGT AGGCCCCTGG AATGCTGACC CTCAGCCTTT TATGGGCTCA
ATGATTTCGG AAACCGCAGC CAAAGGCATG CTGGACGCTC AACGTAACCT GCTCAACCTC
GGAGCCAAAT CCCTGGTGGA GATGACACAT CTGCAAGCCG GTACCGGCCT GGTGTCTCCC
GGTTTGATTG ATGTGACCGA AGTAATTGAA CTGCCTGACG AAGAATACTT TGGCCCCTTA
TTGCAGGTGG TGCGTTACAC CAGTTTCGAC GAGGCTATCC GTCTGGCCAA CGACACCCGC
TATGGCCTGT CTGCCGGCAT TCTGGCCGAT GATAAAGCCG ATTATGAGTA CTTCCTGGCC
CGTATTCGCG CCGGCATTGT GAACTGGAAC AAGCAGATCA CAGGCGCATC AGGCGCGGCA
CCTTTCGGTG GCGTGGGCGC CTCGGGTAAC CACAGAGCCA GCGCCTTCTA TGCGGCCGAC
TACTGTGCCT ATCCGGTGGC ATCCATGGAG GCAGACAGTG TCACGCTGCC CGCCAGCCTG
AGTCCTGGTC TGACGTTATA A
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| Protein sequence | MTQFINGQWL AGEGKEMQSK NPANGEVIWQ GKAAVPAQVQ AAVMAARDAQ FEWFMLGFEG
RQAIVEAYRN ELEANKAELA EVIAQETGKP RWETATEAAA MIGKIGLSVS AYHKRTGTEV
NEGAAGRAVL RHKPHGVVAV FGPYNFPGHL PNGHIVPALL AGNTVVFKPS ELTPKVAELM
LKLWEKAGLP AGVINLVQGE VETGKALASH PQLDGLFFTG SSRTGHLLHQ QYAGHPGKIL
ALEMGGNNPL IVKGVSDTRA AIHDIIQSAF ISSGQRCTCA RRLYVEKGAE GDKLLAGLVE
AVKAIKVGPW NADPQPFMGS MISETAAKGM LDAQRNLLNL GAKSLVEMTH LQAGTGLVSP
GLIDVTEVIE LPDEEYFGPL LQVVRYTSFD EAIRLANDTR YGLSAGILAD DKADYEYFLA
RIRAGIVNWN KQITGASGAA PFGGVGASGN HRASAFYAAD YCAYPVASME ADSVTLPASL
SPGLTL
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