| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3007 |
|---|
| Symbol | |
|---|
| ID | 4605254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3578939 |
|---|
| End bp | 3580276 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639782418 |
|---|
| Product | sensor histidine kinase |
|---|
| Protein accession | YP_928879 |
|---|
| Protein GI | 119776139 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCCA TTCGGGCCAA GCTGAGCCTG TGGTTAACCG GCCTGGTGAT AGTCAGCACT
ATCATCGGGC TGTTTTTGTT TGAGTCCATG CTCAGACAAG CCTTTCACGA CTCCATCATT
AATCGTCTCG AAGAAGATCT GGAACACGTG ATCCTTGCCA CCCACATGCA GGATGGCGAC
ATCGGCATAG ACTCCTCCAT GCTGTCCGGC TTCTATCGCC CCGCTTACTC AGGCCGTTAC
TACCAGCTGA ACCTGCCCGA TGAGGTCATC CGCTCACGCT CCCTGTGGGA CCAGCAACTG
GCCATTACGC CACTGGCACC GAGTGAAACC CGGGTCTGGC AAGCCCGCGG CCCCAAAAAC
CACGACATGC AGCTGCTCAG TGTGGGGCTA AAGTCCCAGA ATGGCAAGAT TCAGGCCACC
CTTACCGTGG CCCAAGACTT GAGTATTGGC CGTAGGGTAT TCAGCGAGAT TTATGGCACC
AAGCTGATGG TCAATCTCGG CATGCTGCTT GCCATGATAA CGGGTATCTT TCTGGTATTG
CGCCAGTCCT TCAAGCCGCT GCGTAAGATT AAAGAAGCCC TGTCACGCTT AAGAGATGGC
GACATCGATC GGCTGGCACT GGATAGCATT CCGGCCGAGC TGCATCCCCT CGCAGCCACC
TACAACGAGC TATTGGAATA CACAGGCAAA CAGATTGCCC GTAGCCGCAA CAACCTGGGT
AACTTAAGCC ATGGTCTGAA AACGCCATTG GCGGTGATGC AACAACAAGT GGAAGCCCTG
GGGCTCAGCG ACCCTGAAAT GGCAGACGCC ATGCAGCAAC AGCTGGATCT CATCCGCAAG
ATGATCGAGC GCAAGCTCGC GGCGGCCCGG GTCACCGGTG ATATGCTGCC TGCGGCGCAA
ATGCAGATCC CAAGGGATCT GGATAGCCTG ACCAACACCC TGAACAAGGT GCATCGCCAC
AAAGATATCC ACTTCAGTAT CGACATCGCC CGCGGCCTGC ATCGACTGCC CATTCACCGG
GAAGACGGCA TGGAACTGAT TGGCAACCTG CTGGATAACG CCTGTAAGTG GGCAAAAGGG
GAAGTCTCCC TGCGCCTCTA CCCGCTGGAT AATCGCCTAT GGCTGGATAT TGAGGACGAT
GGTCCCGGCG TTGCCGACGA TGCACTGTCG CAGCTTACAG AGCGTGGCAA ACGCCTCGAT
GAGGCCGTGA TGGGCCATGG CATTGGCCTG TCCATCGTGA AAGAAATCTG CGAGCAATAT
GAGCTGAAAT TGGATTTCAG CCGTGGTGTG CGCCTTGGTG GCCTCAAGGT CAGTATAGGA
TTTGCGCTGA CGTCCTGA
|
|---|
| Protein sequence | MISIRAKLSL WLTGLVIVST IIGLFLFESM LRQAFHDSII NRLEEDLEHV ILATHMQDGD
IGIDSSMLSG FYRPAYSGRY YQLNLPDEVI RSRSLWDQQL AITPLAPSET RVWQARGPKN
HDMQLLSVGL KSQNGKIQAT LTVAQDLSIG RRVFSEIYGT KLMVNLGMLL AMITGIFLVL
RQSFKPLRKI KEALSRLRDG DIDRLALDSI PAELHPLAAT YNELLEYTGK QIARSRNNLG
NLSHGLKTPL AVMQQQVEAL GLSDPEMADA MQQQLDLIRK MIERKLAAAR VTGDMLPAAQ
MQIPRDLDSL TNTLNKVHRH KDIHFSIDIA RGLHRLPIHR EDGMELIGNL LDNACKWAKG
EVSLRLYPLD NRLWLDIEDD GPGVADDALS QLTERGKRLD EAVMGHGIGL SIVKEICEQY
ELKLDFSRGV RLGGLKVSIG FALTS
|
|---|
| |